Alternatives and similar repositories for biobank

Users that are interested in biobank are comparing it to the libraries listed below

• cheinle / MetaLIMS
  MetaLIMS, A Simple Open-Source Laboratory Information Management System for Small Metagenomic Labs
  ☆59Updated 3 years ago
• molgenis / molgenis-emx2
  MOLGENIS EMX2, the latest version of the MOLGENIS data platform.
  ☆23Updated this week
• maxplanck-ie / parkour
  Moved to: https://github.com/maxplanck-ie/parkour2
  ☆33Updated 3 years ago
• Steven-N-Hart / vcf-miner
  VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files
  ☆37Updated 6 years ago
• decodebiology / geneSCF_inactive
  GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
  ☆20Updated 5 years ago
• molgenis / molgenis
  MOLGENIS - for scientific data: management, exploration, integration and analysis.
  ☆119Updated 2 weeks ago
• ICGC-TCGA-PanCancer / CGP-Somatic-Docker
  Dockerised and simplified version of SeqWare-CGP-SomaticCore
  ☆14Updated 4 years ago
• MonashBioinformaticsPlatform / bio-ansible
  Proof of concept to use ansible + Lmod to deploy a bioinformatics server
  ☆24Updated 6 months ago
• bartongroup / AlmostSignificant
  A server for maintaining high-throughput sequencing QC data
  ☆13Updated 4 months ago
• biomart / BioMart
  ☆21Updated 9 years ago
• idekerlab / ddot
  Toolkit for constructing, analyzing, and visualizing data-driven ontologies
  ☆17Updated 2 years ago
• dohalloran / PrimerMapper
  GUI for batch primer design with graphical output for PCR and SNP detection
  ☆17Updated 7 years ago
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆15Updated 7 months ago
• biocompute-objects / BCO_Documentation
  Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
  ☆17Updated last year
• nasqar / ClusterProfShinyORA
  A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
  ☆12Updated 5 years ago
• pschorderet / NEAT
  NExt generation Analysis Toolbox
  ☆14Updated 10 years ago
• bioinformatics-core-shared-training / Managing-your-research-data
  Course on good principles & practices in Data Management (https://tinyurl.com/cruk-myrd)
  ☆18Updated 2 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 9 years ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 4 years ago
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 3 years ago
• PersonalizedOncology / ClinVAP
  Clinical Variant Annotation Pipeline
  ☆10Updated 5 years ago
• mikessh / oncofuse
  Predicting oncogenic potential of gene fusions
  ☆12Updated 9 years ago
• SouthGreenPlatform / TOGGLE
  Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
  ☆18Updated 3 years ago
• BioinformaticsFMRP / TCGAbiolinksGUI
  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/
  ☆37Updated 4 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated last week
• ubccr / genesysv
  Gene Exploration System for Variance
  ☆21Updated 3 years ago
• AlexsLemonade / RNA-Seq-Exercises
  Exercises for training scientists to perform some RNA-seq analyses.
  ☆11Updated 6 years ago
• sbg / sevenbridges-r
  Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
  ☆36Updated 3 years ago
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆29Updated 4 years ago
• BushmanLab / INSPIIRED
  ☆13Updated 7 years ago