zapaishchykova / SegmentationReviewLinks
Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created to speed up the validation process done by a clinician - the dataset loads in one batch with no need to load masks and volumes separately.
☆26Updated 4 months ago
Alternatives and similar repositories for SegmentationReview
Users that are interested in SegmentationReview are comparing it to the libraries listed below
Sorting:
- Stores the MHub models dockerfiles and scripts.☆10Updated 6 months ago
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆102Updated last month
- Transparent and reproducible medical image processing pipelines in Python.☆50Updated last week
- Computed tomography to body composition (Comp2Comp).☆97Updated last month
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆43Updated 3 months ago
- BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Comp…☆51Updated 3 months ago
- Medical Image Radiomics Processor☆72Updated 2 months ago
- Precision medicine toolbox☆70Updated last year
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆93Updated last month
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆137Updated 4 months ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆31Updated last year
- Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…☆81Updated last year
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆78Updated last year
- PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion☆51Updated 3 weeks ago
- The easiest tool for experimenting with radiomics features.☆41Updated last year
- DICOM RT-Struct to mask☆102Updated last year
- A project to provide custom sorting and renaming of dicom files☆79Updated 5 months ago
- Python wrapper for Plastimatch.☆19Updated 6 months ago
- Website for NA-MIC Project Weeks☆92Updated last month
- Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterat…☆75Updated last week
- SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI☆112Updated 10 months ago
- Extension for 3D Slicer for running MONAI Auto3DSeg models☆100Updated 2 weeks ago
- Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and Simpl…☆102Updated 10 months ago
- Deep learning software modules for image-guided medical procedures☆73Updated last month
- nii2dcm: NIfTI to DICOM creation with Python☆82Updated 5 months ago
- ☆76Updated last month
- Python package to simplify access to the data available from NCI Imaging Data Commons☆16Updated last week
- Brain extraction in presence of abnormalities, using single and multiple MRI modalities☆36Updated 7 months ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆87Updated 3 years ago
- Model Zoo for parameter settings in Elastix, ITKElastix and SimpleElastix☆52Updated 7 months ago