dongdawn / ridLinks
rid
☆22Updated 4 years ago
Alternatives and similar repositories for rid
Users that are interested in rid are comparing it to the libraries listed below
Sorting:
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆21Updated last year
- ☆69Updated last year
- Tools to build coarse grained models and perform simulations with OpenMM☆24Updated 2 years ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- Geometric super-resolution for molecular geometries☆42Updated 3 years ago
- Force Fields☆66Updated 10 months ago
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆22Updated 6 years ago
- Implementation of Shape and Electrostatic similarity metric in deepFMPO.☆45Updated 3 years ago
- ☆44Updated 3 years ago
- ☆25Updated last year
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆16Updated last year
- pyCHARMM tutorial, documentation and examples. This repository contains materials originally from the pyCHARMM Workshop run at the Univer…☆72Updated 2 months ago
- LAST: Latent Space Assisted Adaptive Sampling for Protein Trajectories☆12Updated 2 years ago
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆39Updated 2 years ago
- Standalone charge assignment from Espaloma framework.☆44Updated last month
- A tutorials suite for BioSimSpace.☆31Updated last month
- The official repository of Uni-pKa☆86Updated 8 months ago
- Set of tools for input preparation for conserved water search from MD trajectories (gromacs, amber) and their analysis☆18Updated 2 months ago
- ☆24Updated 2 years ago
- A collections of scripts for working molecular dynamics simulations☆44Updated 4 months ago
- Cryptic pocket prediction using AlphaFold 2☆24Updated 3 years ago
- Implementation of Differentiable Molecular Simulations with torchMD.☆15Updated 2 years ago
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆19Updated 6 months ago
- ☆47Updated 5 years ago
- Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…☆88Updated 4 months ago
- ☆22Updated 5 months ago
- The public versio☆68Updated 2 years ago
- Trusted force field files for gromacs☆64Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆39Updated 2 years ago
- All in one Structure-Based Virtual Screening workflow based on the concept of consensus docking.☆50Updated last month