yuyangw / Denoise-Pretrain-ML-PotentialLinks
Implementation of "Denoise Pretraining on Non-equilibrium Molecular Conformations for Accurate and Transferable Neural Potentials" in PyTorch.
☆14Updated last year
Alternatives and similar repositories for Denoise-Pretrain-ML-Potential
Users that are interested in Denoise-Pretrain-ML-Potential are comparing it to the libraries listed below
Sorting:
- Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching☆9Updated last month
- Geometric super-resolution for molecular geometries☆41Updated 3 years ago
- Denoising diffusion probabilistic models for replica exchange☆24Updated 3 years ago
- ☆23Updated last year
- Data and code for graph neural network accelerated molecular dynamics☆42Updated 3 years ago
- Flow-matching for coarse graining of miniproteins.☆18Updated 2 years ago
- [TMLR 2023] Training and simulating MD with ML force fields☆111Updated 8 months ago
- An E(3) Equivariant Variational Autoencoder for Molecular Linker Design☆47Updated 2 years ago
- Message Passing Neural Networks for Molecule Property Prediction☆41Updated 2 years ago
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆85Updated 5 months ago
- ☆27Updated last year
- Supporting data for the manuscript "Deep learning the slow modes for rare events sampling"☆20Updated last year
- DiAMoNDBack: Diffusion-denoising Autoregressive Model for Non-Deterministic Backmapping of Cα Protein Traces☆19Updated 2 months ago
- [ICML 2025] Repurposing pre-trained score-based generative models for transition path sampling by minimizing the Onsager-Machlup (OM) act…☆12Updated 2 weeks ago
- [TMLR 2023] Simulate time-integrated coarse-grained MD with multi-scale graph neural networks☆71Updated last year
- A library for building equivariant neural networks and a zoo of implementations & examples.☆32Updated 2 years ago
- Multi-modal conditioning diffusion model for MOFs generation☆31Updated 5 months ago
- Learning Joint 2D & 3D Diffusion Models for Complete Molecule Generation☆49Updated last year
- G-SchNet extension for SchNetPack☆59Updated 8 months ago
- ☆56Updated 7 months ago
- ☆21Updated 5 years ago
- Source code for Equivariant Flow Matching for Molecular Conformer Generation☆36Updated last month
- Efficient 3D molecular generation with flow-matching and Semla☆34Updated 3 months ago
- Timewarp is a research project using deep learning to accelerate molecular dynamics simulation.☆54Updated 10 months ago
- cG-SchNet - a conditional generative neural network for 3d molecular structures☆61Updated 2 years ago
- ☆13Updated last year
- Implementation of ICML2023 paper : Coarse-to-Fine: a Hierarchical Diffusion Model for Molecule Generation in 3D☆47Updated last year
- A framework for training diffusion models with stable, self-consistent scores near the data distribution.☆23Updated 3 weeks ago
- Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms☆29Updated last year
- Example to fit parameters and run CG simulations using TorchMD and Schnet☆46Updated 3 years ago