How to make images for publication using VMD
☆43May 5, 2021Updated 4 years ago
Alternatives and similar repositories for mkvmd_render
Users that are interested in mkvmd_render are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multiscale Simulation Tool for Backmapping☆22Mar 13, 2026Updated last month
- CHAP is a tool for the functional annotation of ion channel structures:☆21Jan 17, 2024Updated 2 years ago
- Automatic CHARMM-GUI browser interaction with Python☆18Mar 20, 2023Updated 3 years ago
- ☆27Jan 20, 2022Updated 4 years ago
- NMRforMD is a python script for the calculation of NMR relaxation time T1 and T2 from molecular dynamics trajectory file.☆25May 3, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.☆28Oct 1, 2020Updated 5 years ago
- ☆45Jan 8, 2026Updated 3 months ago
- Repository for 2022 Summer DFT for Catalysis i-CoMSE workshop☆14Jul 13, 2023Updated 2 years ago
- Yasara Plugin for QM calculations☆14May 9, 2024Updated last year
- Materials, issues and things for the 2018 Workshop and Hackathon☆14Jul 25, 2025Updated 8 months ago
- A Python library to apply the Marginal Standard Error Rule (MSER) for transient regime detection and truncation on Grand Canonical Monte …☆29May 8, 2025Updated 11 months ago
- Tutorials and examples for nicer animations (movies) and images in PyMOL.☆21Jan 29, 2015Updated 11 years ago
- Repository for material from the 2020 MC/MD Summer Workshop☆14Jul 12, 2024Updated last year
- References, presentations and other resources☆15Oct 31, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Resources for teaching quantum chemistry courses in Bonn☆41Updated this week
- Self explained tutorial for molecular dynamics simulation using gromacs☆46Nov 16, 2024Updated last year
- OpenMM plugin for simulating electrochemical systems☆22Sep 23, 2024Updated last year
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆66Nov 26, 2025Updated 4 months ago
- polypy - Analysis Tools for Solid State Molecular Dynamics and Monte Carlo Trajectories☆14Mar 4, 2021Updated 5 years ago
- ☆16Jul 28, 2022Updated 3 years ago
- Generates Martini models for open carbon nanotubes to use with Gromacs.☆15Nov 24, 2021Updated 4 years ago
- Supernova's MM-PBSA binding free energy calculation tool.☆11Apr 8, 2026Updated last week
- Tool to build force field input files for molecular simulation☆195Apr 1, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Quantum machine learning (QML) molecular representations and core functions☆25Feb 21, 2026Updated last month
- Automated workflow for generating quantum chemistry calculation of explicitly solvated molecules☆58Mar 12, 2026Updated last month
- Notes on Electronic Structure Theory (CHEM532)☆25Feb 14, 2025Updated last year
- OpenMM tutorial for the MSBS course☆188Mar 19, 2026Updated 3 weeks ago
- A collections of scripts for working molecular dynamics simulations☆45Feb 6, 2026Updated 2 months ago
- Workshop - Analysis of Molecular Dynamics Simulation Using Python☆20Aug 14, 2020Updated 5 years ago
- WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis☆213Apr 2, 2026Updated last week
- Plots absorption spectra from from ORCA output files☆20Oct 2, 2024Updated last year
- Density based object completion over PBC.☆30Dec 10, 2024Updated last year
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Personal functions for making figures in Python☆19Mar 24, 2026Updated 3 weeks ago
- Source, test set, and document for Molecular Dynamics software, GENESIS.☆42Jan 7, 2026Updated 3 months ago
- Benchmark for generative models for materials☆40Mar 10, 2026Updated last month
- easyPARM is a computational tool developed to simplify the derivation of force field parameters for metal-containing molecular systems an…☆36Mar 12, 2026Updated last month
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆28Nov 3, 2023Updated 2 years ago
- ☆21Feb 19, 2021Updated 5 years ago
- Collection of Python scripts to setup and run simulations with OpenMM☆17May 22, 2020Updated 5 years ago