kyonofx / mlcgmdLinks
[TMLR 2023] Simulate time-integrated coarse-grained MD with multi-scale graph neural networks
☆72Updated 2 years ago
Alternatives and similar repositories for mlcgmd
Users that are interested in mlcgmd are comparing it to the libraries listed below
Sorting:
- [TMLR 2023] Training and simulating MD with ML force fields☆115Updated last year
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆91Updated 11 months ago
- This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…☆66Updated last year
- Geometric super-resolution for molecular geometries☆42Updated 3 years ago
- Data and code for graph neural network accelerated molecular dynamics☆42Updated 3 years ago
- Reference implementation of "Ewald-based Long-Range Message Passing for Molecular Graphs" (ICML 2023)☆51Updated 2 years ago
- Timewarp is a research project using deep learning to accelerate molecular dynamics simulation.☆58Updated last year
- Codebase for Cormorant Neural Networks☆60Updated 3 years ago
- Flow-matching for coarse graining of miniproteins.☆18Updated 3 years ago
- Generative model for molecular distance geometry☆38Updated 2 years ago
- ☆69Updated 3 years ago
- Implementation of "Denoise Pretraining on Non-equilibrium Molecular Conformations for Accurate and Transferable Neural Potentials" in PyT…☆14Updated 2 years ago
- Source code for "A universal framework for accurate and efficient geometric deep learning of molecular systems" (Nature Scientific Report…☆72Updated last month
- A library for building equivariant neural networks and a zoo of implementations & examples.☆31Updated 3 years ago
- cG-SchNet - a conditional generative neural network for 3d molecular structures☆65Updated 2 years ago
- Research repository for the proposed equivariant graph attention network that operates on large biomolecules proposed by Le et al. (2022)☆20Updated 3 years ago
- List of Geometric GNNs for 3D atomic systems☆119Updated last year
- G-SchNet - a generative model for 3d molecular structures☆145Updated 2 years ago
- Example to fit parameters and run CG simulations using TorchMD and Schnet☆47Updated 3 years ago
- An E(3) Equivariant Variational Autoencoder for Molecular Linker Design☆51Updated 3 years ago
- [ICML 2025] Repurposing pre-trained score-based generative models for transition path sampling by minimizing the Onsager-Machlup (OM) act…☆24Updated last month
- Official implementation of "Generating 3D Molecules for Target Protein Binding" [ICML2022 Long Presentation]☆110Updated 2 years ago
- ☆38Updated 3 years ago
- Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023☆130Updated last year
- Rapid experimentation and scaling of deep learning models on molecular and crystal graphs.☆75Updated 2 years ago
- Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)☆46Updated 4 years ago
- Mixed continous/categorical flow-matching model for de novo molecule generation.☆173Updated last week
- Message Passing Neural Networks for Molecule Property Prediction☆49Updated 3 years ago
- [ICLR'24] Symphony: Symmetry-Equivariant Point-Centered Spherical Harmonics for Molecule Generation☆28Updated 10 months ago
- Generative modeling of molecular dynamics trajectories☆185Updated last month