kyonofx / mlcgmdLinks
[TMLR 2023] Simulate time-integrated coarse-grained MD with multi-scale graph neural networks
☆72Updated last year
Alternatives and similar repositories for mlcgmd
Users that are interested in mlcgmd are comparing it to the libraries listed below
Sorting:
- This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…☆62Updated last year
- [TMLR 2023] Training and simulating MD with ML force fields☆111Updated 7 months ago
- Geometric super-resolution for molecular geometries☆41Updated 3 years ago
- Tutorials and data necessary to reproduce the results of publication Machine Learning Coarse-Grained Potentials of Protein Thermodynamics☆84Updated 5 months ago
- Generative model for molecular distance geometry☆39Updated 2 years ago
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated 11 months ago
- The official implementation of Energy-Inspired Molecular Conformation Optimization (ICLR 2022)☆36Updated 2 years ago
- Flow-matching for coarse graining of miniproteins.☆18Updated 2 years ago
- ☆34Updated 4 months ago
- Codebase for Cormorant Neural Networks☆60Updated 3 years ago
- A GFlowNet with a chemical synthesis action space.☆63Updated 4 months ago
- Learning Neural Generative Dynamics for Molecular Conformation Generation (ICLR 2021)☆46Updated 3 years ago
- Official implementation of pre-training via denoising for TorchMD-NET☆90Updated 2 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- An E(3) Equivariant Variational Autoencoder for Molecular Linker Design☆47Updated 2 years ago
- Mixed continous/categorical flow-matching model for de novo molecule generation.☆109Updated last week
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated last year
- cG-SchNet - a conditional generative neural network for 3d molecular structures☆61Updated 2 years ago
- A geometry-complete SE(3)-equivariant perceptron network (GCPNet) for 3D graphs. (Bioinformatics)☆46Updated 2 months ago
- Geom3D: Geometric Modeling on 3D Structures, NeurIPS 2023☆120Updated last year
- ☆90Updated 2 years ago
- List of Geometric GNNs for 3D atomic systems☆110Updated last year
- ☆27Updated last month
- Implementation of "Denoise Pretraining on Non-equilibrium Molecular Conformations for Accurate and Transferable Neural Potentials" in PyT…☆13Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆99Updated 10 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆64Updated 3 weeks ago
- Generative modeling of molecular dynamics trajectories☆156Updated 2 months ago
- Pose checks for 3D Structure-based Drug Design methods☆82Updated 7 months ago
- Example to fit parameters and run CG simulations using TorchMD and Schnet☆46Updated 3 years ago