p-j-r / covid-19
Stochastic SIR models; adding age-structures and social contact data for the spread of covid-19. Lattice model for identifying and isolating hotspots. This has been further developed into a network(graph) of multiple clusters(lattices) and tracing the infection in such a population.
☆15Updated 3 years ago
Alternatives and similar repositories for covid-19:
Users that are interested in covid-19 are comparing it to the libraries listed below
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆40Updated 4 years ago
- Simulation of the COVID-19 outbreak using standard epidemiological models☆39Updated 5 years ago
- Agent-based simulation model for COVID-19 spread in society and patient outcomes☆31Updated last week
- Interactive notebooks with tutorials for the agentpy package.☆15Updated 3 years ago
- Constructing a null model and measuring the nestedness of bipartite networks☆12Updated 4 years ago
- Temporal network visualization☆15Updated 3 years ago
- Compartmental SEIQRD model to model the effects of government policies on SARS-CoV-2 spread in Belgium. Macro-economic Input-Output model…☆23Updated 2 months ago
- SIR, SEIR, and beyond☆10Updated last year
- Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.☆25Updated 9 months ago
- Mathematical modelling of different strategies to reopen schools in the UK post COVID-19☆13Updated 2 years ago
- hacky way to bundle some edges in networkx and matplotlib☆20Updated 4 years ago
- ☆25Updated 3 years ago
- COVID-ABS: An Agent-Based Model of COVID-19 Epidemic to Simulate Health and Economic Effects of Social Distancing Interventions☆86Updated 2 years ago
- Bayesian fit to SEIR model. An extension to Penn Medicine's CHIME tool.☆28Updated 4 years ago
- Model-based time series clustering using variational inference.☆12Updated 6 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- Disease propagation ABM generating SIR, severe cases, and R0 over quasi-time.☆40Updated 2 years ago
- Forecasting hospitalization and ICU rates of the COVID-19 outbreak: an efficient SEIR model☆13Updated 4 years ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated last week
- Simple SEIR model Python script for the COVID-19 pandemic with real world data comparison.☆81Updated 4 years ago
- Create synthetic populations for COVID-19 epidemic analyses.☆46Updated last month
- Network analysis with Input-Output Matrix. Project developed as a conclusion of my graduation in economics where I explored the use of ne…☆13Updated 5 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- US county level interactive map of Covid-19 cases☆19Updated 4 years ago
- ☆11Updated 4 years ago
- Analysis code and data for COVID-19 age-specific clinical fraction☆22Updated 4 years ago
- (Developers version) SEIR model for COVID-19 infection, including different clinical trajectories of infection☆17Updated 4 years ago
- Introduction to Scientific Python☆15Updated 5 years ago
- A walkthrough of how SIR infectious disease modeling works, along with a do-it-yourself Python COVID model that you can use to simulate a…☆16Updated 4 years ago
- CovsirPhy: Python library for COVID-19 analysis with phase-dependent SIR-derived ODE models.☆109Updated this week