Alternatives and similar repositories for PALS:

Users that are interested in PALS are comparing it to the libraries listed below

• KUL-Radneuron / KUL_VBG
  A workflow to allow Freesurfer recon-all to run on brain image with gliomas
  ☆29Updated 8 months ago
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆66Updated 7 months ago
• srikash / presurfer
  Scripts to prepare MP2RAGE for Freesurfer
  ☆25Updated last year
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆46Updated this week
• neurolabusc / Clinical
  Clinical Toolbox for SPM (https://www.nitrc.org/projects/clinicaltbx/)
  ☆45Updated 3 years ago
• pBFSLab / DeepPrep
  DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning
  ☆44Updated last week
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆71Updated last month
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆46Updated 6 months ago
• sameerd / DiffusionTensorImaging
  Single Shell Free Water Elimination Model for Diffusion Tensor Imaging
  ☆23Updated last year
• pnlbwh / dMRIharmonization
  Multi-site dMRI harmonization
  ☆46Updated last month
• neurolabusc / nii_preprocess
  nii_preprocess adapted for LARC and ABC studies at UofSC
  ☆22Updated 3 years ago
• vishnubashyam / DeepBrainNet
  Convolutional Neural Network trained for age prediction using a large (n=11,729) set of MRI scans from a highly diversified cohort spanni…
  ☆46Updated 4 years ago
• nipreps / dmriprep
  dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual interv…
  ☆65Updated last year
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆61Updated 3 months ago
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆49Updated this week
• gbarisano / alps
  Bash script to compute DTI-ALPS
  ☆42Updated 3 weeks ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆62Updated this week
• openneuropet / PET_pipelines
  A suite of brain PET processing pipelines
  ☆13Updated last month
• jlohmeier / atlasBREX
  atlasBREX: Automated averaged template-derived brain extraction in animal MRI
  ☆16Updated last year
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆65Updated this week
• HumanBrainED / NHP-BrainExtraction
  ☆34Updated 2 years ago
• CyclotronResearchCentre / spm_auto_reorient
  A few routines to perform "auto reorient" in SPM
  ☆15Updated 2 years ago
• aces / CIVET_Full_Project
  CIVET Installer
  ☆26Updated 3 years ago
• rpomponio / neuroHarmonize
  Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variabl…
  ☆87Updated this week
• braincharter / vasculature
  Region- and voxel-based probabilistic mapping of whole-brain veins and arteries (densities and diameter) in the MNI space
  ☆49Updated 2 years ago
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆59Updated last month
• yeatmanlab / AFQ
  Automated Fiber Quantification
  ☆76Updated 11 months ago
• benoitberanger / niix2bids
  Automatic BIDS architecture
  ☆13Updated 5 months ago
• Qoala-T / QC
  Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data
  ☆75Updated 3 years ago