Python implementation of Dynamical Network Analysis
☆16Aug 6, 2025Updated 9 months ago
Alternatives and similar repositories for dynetan
Users that are interested in dynetan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of tutorials for the python implementation of Dynamical Network Analysis☆15Aug 6, 2025Updated 9 months ago
- A python implementation of the string method with swarms of trajectories using GROMACS☆19Oct 19, 2022Updated 3 years ago
- ☆21Aug 16, 2019Updated 6 years ago
- ☆37Oct 14, 2024Updated last year
- Reference-free analysis of genetic architecture☆23Sep 21, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Graphical Representation of Ancestral Sequence Predictions☆13Mar 6, 2023Updated 3 years ago
- Different run and analysis scripts as described in the research guides.☆14Jul 5, 2022Updated 3 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Feb 11, 2021Updated 5 years ago
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆35Jul 17, 2024Updated last year
- GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the …☆11Apr 7, 2023Updated 3 years ago
- ☆19Jun 14, 2025Updated 10 months ago
- The official GitHub repository for the Nature Communications paper "Computational Design of Generalist Cyclopropanases with Stereodiverge…☆13Jan 23, 2026Updated 3 months ago
- Wrapper script for preparing explicitly solvated systems for molecular dynamics simulations with Amber.☆17Feb 6, 2026Updated 3 months ago
- A fully GPU-accelerated molecular dynamics program for the Martini force field☆35Sep 13, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Neural relational inference for molecular dynamics simulations☆59May 30, 2023Updated 2 years ago
- Code associated with the paper 'Cracking the blackbox of deep sequence-based protein-protein interaction prediction'☆31Jan 8, 2024Updated 2 years ago
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- Lectures for the SC3260 HPC course at Vanderbilt☆20May 5, 2020Updated 6 years ago
- ☆18Jan 19, 2026Updated 3 months ago
- ☆11Apr 16, 2021Updated 5 years ago
- De Novo Drug Design by Iterative Multi-Objective Deep Reinforcement Learning with graph-based Molecular Quality Assessment☆15Mar 20, 2023Updated 3 years ago
- A VMD script to calculate side-chain and backbone dihedrals (torsion angles)☆14Jun 4, 2016Updated 9 years ago
- NAMD QM/MM Tutorial on Free Energy Profile of Reaction Mechanisms☆15Sep 14, 2018Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A lightweight package with the periodic table of the elements☆12Apr 1, 2021Updated 5 years ago
- Normal Mode Analysis for Macromolecules☆18Apr 1, 2017Updated 9 years ago
- Python implementation of the umbrella integration method for potential of mean force (PMF) calculations☆17Feb 4, 2019Updated 7 years ago
- Bokeh extensions to plot molecules easily☆10Jul 14, 2025Updated 9 months ago
- ☆13Jun 10, 2024Updated last year
- This software package simulates the reduction of graphene oxide and calculates the optical response of the generated sp2 domains☆11Dec 22, 2016Updated 9 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Tools to add restraints to FEP runs. Includes a workflow to determine reference structures and restraint widths from plain MD simulations…☆12Mar 12, 2026Updated last month
- Repository for material from the 2020 MC/MD Summer Workshop☆14Jul 12, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Analyze correlated motions in MD trajectories with only a few lines of Python.☆33Jan 17, 2018Updated 8 years ago
- PKSmart: Predicting PK properties using Chemical Structures☆19Sep 26, 2025Updated 7 months ago
- Spectral Gap Optimization of Parameters☆18Mar 28, 2020Updated 6 years ago
- mdml: Deep Learning for Molecular Simulations☆54May 17, 2025Updated 11 months ago
- Computing the Committor with the Committor: an Anatomy of the Transition State Ensemble☆14Jul 12, 2024Updated last year
- MoSDeF-GOMC: Python software for the creation of scientific workflows for the Monte Carlo simulation engine GOMC☆17Apr 30, 2026Updated last week
- DyNoPy☆11Sep 5, 2024Updated last year