Collection of string algorithms
☆26May 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for string-algorithms
Users that are interested in string-algorithms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- ☆10Jan 19, 2019Updated 7 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on …☆12May 22, 2024Updated 2 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 10 months ago
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13May 5, 2026Updated 3 weeks ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- A small, auxiliary index to massively improve parallel fastq parsing☆32Mar 6, 2026Updated 2 months ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 3 months ago
- A lightweight suffix-sorting library enhanced with LCP construction☆13Mar 26, 2020Updated 6 years ago
- ☆10Jun 9, 2025Updated 11 months ago
- A Rust-based library for phylogenetic analysis and manipulation☆20May 13, 2026Updated 2 weeks ago
- ☆11Dec 24, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated 8 months ago
- Rapidly extract reads from a FASTQ file based on taxonomic classification via Kraken2.☆13Jan 26, 2026Updated 4 months ago
- Pacbio sequence alignment tool, please use "git clone" to copy and use the repository☆18Feb 17, 2019Updated 7 years ago
- Write-once-read-many table for large datasets.☆27Oct 5, 2023Updated 2 years ago
- Needleman-Wunsch Alignment in Go☆12Nov 9, 2020Updated 5 years ago
- TreeKnit is a package that infers Ancestral Reassortment Graphs for segmented genomes (typically, human influenza).☆14Feb 18, 2025Updated last year
- rans optimized tricks☆26Apr 27, 2018Updated 8 years ago
- ☆15May 22, 2025Updated last year
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Sep 27, 2017Updated 8 years ago
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- plane sweep filtering genome alignments☆24Updated this week
- Rust implementation of the XXH3 hash function☆27Aug 10, 2025Updated 9 months ago
- LMS algorithm for computing edit distance with SIMD optimizations☆11Mar 25, 2024Updated 2 years ago
- This project is dedicated to reviving Chapter Master and building upon it.☆16Aug 9, 2022Updated 3 years ago
- ☆27Apr 13, 2018Updated 8 years ago
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Terminal-based multiple sequence alignment (MSA) viewer designed for remote and HPC bioinformatics workflows.☆30May 14, 2026Updated 2 weeks ago
- RabbitKSSD: accelerating genome distance estimation on modern multi-core architectures☆12Jun 5, 2024Updated last year
- Development repo for pyani-plus (the next iteration of pyani)☆33May 19, 2026Updated last week
- snakemake-powered cli to download genomes using NCBI datasets☆15Aug 14, 2025Updated 9 months ago
- Automatically exported from code.google.com/p/mmc☆29Aug 5, 2022Updated 3 years ago
- A repo with just adapter sequences☆15Jul 7, 2025Updated 10 months ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated last year