jcreinhold / niftidatasetLinks
pytorch dataset class for reading and transforming NIfTI files
☆63Updated 3 years ago
Alternatives and similar repositories for niftidataset
Users that are interested in niftidataset are comparing it to the libraries listed below
Sorting:
- Fastai extension to work with 3d medical images☆41Updated 5 years ago
- PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using…☆103Updated 4 years ago
- Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net☆132Updated 5 years ago
- A tool to do quick and dirty inspection of multichannel 3D data. I use it mainly to visualize batches for deep learning.☆51Updated 3 months ago
- Skull stripping and brain tissue segmentation☆122Updated 6 years ago
- Official Pytorch Implementation of "Generation of 3D Brain MRI Using Auto-Encoding Generative Adversarial Network" (accepted by MICCAI 20…☆129Updated 3 years ago
- This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MI…☆51Updated 2 years ago
- normalize the intensities of various MR image modalities☆325Updated 4 months ago
- Robust Brain Extraction Tool for CT Head Images☆46Updated 4 years ago
- Code for DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation☆69Updated last year
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆82Updated 2 years ago
- Multi-Planar UNet for autonomous segmentation of 3D medical images☆191Updated last year
- 3D Multi-modal (FLAIR and T1) Brain MRI Scan Segmentation using Generative Adversarial Learning☆20Updated 5 years ago
- ☆42Updated 7 years ago
- Intensity normalization of multi-channel MRI images using the method proposed by Nyul et al. 2000☆59Updated 3 years ago
- This is a repository containing code to Paper "Optimized High Resolution 3D Dense-U-Net Network for Brain and Spine Segmentation" publish…☆217Updated last month
- winning method for WMH segmentation challenge in MICCAI 2017☆47Updated 4 years ago
- Tensorflow Code for "PHiSeg: Capturing Uncertainty in Medical Image Segmentation", Proc. MICCAI 2019☆127Updated 2 years ago
- COVID-19 Pneumonia Lesion segmentation network☆88Updated 3 years ago
- Automated deep-learning based brain tumor segmentation on MRI☆31Updated 2 years ago
- Dataset of head and neck CT scans and segmentations in NRRD format.☆94Updated 4 years ago
- pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis☆60Updated 6 months ago
- The implementation of 3D-UNet using PyTorch☆101Updated 3 months ago
- Automated deep-learning based brain extraction applicable to a broad range of MRI sequence types and with robust performance even in the …☆36Updated 3 years ago
- Implementation of "Practical Window Setting Optimization for Medical Image Deep learning"☆42Updated 5 years ago
- Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhanceme…☆204Updated 7 years ago
- Framework for the reproducible processing of neuroimaging data with deep learning methods☆168Updated last month
- All credit goes to the authors listed at https://journals.plos.org/plosmedicine/article?id=10.1371/journal.pmed.1002699☆33Updated 6 years ago
- Medical images I/O python package☆34Updated 2 years ago
- ☆78Updated last year