biomedia-mira / blast-ct
Brain Lesion Analysis and Segmentation Tool for Computed Tomography
☆64Updated 2 years ago
Alternatives and similar repositories for blast-ct
Users that are interested in blast-ct are comparing it to the libraries listed below
Sorting:
- Robust Brain Extraction Tool for CT Head Images☆46Updated 4 years ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆63Updated 3 years ago
- Pytorch implementation of the paper Iterative fully convolutional neural networks for automatic vertebra segmentation accepted in MIDL201…☆63Updated last year
- 💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model☆67Updated 7 months ago
- Multi-class U-Net for head CT segmentation☆33Updated 2 years ago
- Docker for running stroke lesion core segmentation☆29Updated 4 years ago
- PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using…☆103Updated 4 years ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆82Updated 2 years ago
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.☆72Updated 9 months ago
- Segmentation of prostate from MRI scans☆45Updated 3 years ago
- A 3D U-Net Based Solution to BraTS 2019 in Keras☆51Updated 4 years ago
- Deep Whole Brain Segmentation Using SLANT Method☆118Updated last year
- Intensity normalization of multi-channel MRI images using the method proposed by Nyul et al. 2000☆59Updated 3 years ago
- Computed tomography to body composition (Comp2Comp).☆82Updated this week
- Automated deep-learning based brain tumor segmentation on MRI☆31Updated 2 years ago
- Implementation of the DeepVesselNet deep learning network☆147Updated last year
- pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis☆60Updated 5 months ago
- We provide DeepMedic and 3D UNet in pytorch for brain tumore segmentation. We also integrate location information with DeepMedic and 3D U…☆110Updated 4 years ago
- This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MI…☆51Updated 2 years ago
- DeepBleed: 3D Volumetric Intracranial Hemorrhage Segmentation for Clinical Trials☆27Updated last year
- Medical Image Analysis Lab (MIALab), University of Bern☆26Updated 11 months ago
- This repository contains the code used for the paper "Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and …☆31Updated 2 years ago
- The code for the paper Improving CT Image Tumor Segmentation Through Deep Supervision and Attentional Gates.☆31Updated 4 years ago
- Code for training a 3DUnet for Brain tumour segmentation from Brats 2019 dataset; for feature extraction from the segmented volumes and f…☆24Updated 4 years ago
- Recipes for common medical image segmentation tasks using 3D Slicer☆55Updated 2 years ago
- Whole Heart Segmentation☆31Updated 4 years ago
- A tool to do quick and dirty inspection of multichannel 3D data. I use it mainly to visualize batches for deep learning.☆51Updated 3 months ago
- Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes☆38Updated last week
- Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net☆132Updated 5 years ago
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.☆86Updated 7 months ago