biomedia-mira / blast-ct
Brain Lesion Analysis and Segmentation Tool for Computed Tomography
β64Updated last year
Alternatives and similar repositories for blast-ct:
Users that are interested in blast-ct are comparing it to the libraries listed below
- π₯ Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning modelβ66Updated 6 months ago
- β41Updated 7 years ago
- Pytorch implementation of the paper Iterative fully convolutional neural networks for automatic vertebra segmentation accepted in MIDL201β¦β63Updated last year
- Robust Brain Extraction Tool for CT Head Imagesβ46Updated 4 years ago
- Computed tomography to body composition (Comp2Comp).β73Updated 3 months ago
- Workflow for Optimal Radiomics Classificationβ74Updated last month
- Brain CT image segmentation, normalisation, skull-stripping and total brain/intracranial volume computation.β70Updated 8 months ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentationβ63Updated 3 years ago
- Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.β25Updated 2 years ago
- Lobe Segmentationβ30Updated 4 years ago
- Brain extraction in presence of abnormalities, using single and multiple MRI modalitiesβ34Updated 3 weeks ago
- Brain vessel segmentation using 3D convolutional neural networksβ42Updated 2 years ago
- Maximum intensity projection for medical imageβ21Updated 7 years ago
- Docker for running stroke lesion core segmentationβ29Updated 4 years ago
- Automated deep-learning based brain tumor segmentation on MRIβ30Updated 2 years ago
- Weakly supervised 3D classification of multi-disease chest CT scans using multi-resolution deep segmentation features via dual-stage CNN β¦β34Updated 4 years ago
- This repository contains the code used for the paper "Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and β¦β31Updated 2 years ago
- Medical Image Radiomics Processorβ65Updated 3 weeks ago
- Recipes for common medical image segmentation tasks using 3D Slicerβ55Updated 2 years ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.β82Updated 2 years ago
- Implementation of the DeepVesselNet deep learning networkβ146Updated last year
- RSANet: Recurrent Slice-wise Attention Network for Multiple Sclerosis Lesion Segmentation (MICCAI 2019)β26Updated 5 years ago
- This repository holds the code framework used in the paper Reg R-CNN: Lesion Detection and Grading under Noisy Labels. It is a fork of MIβ¦β51Updated 2 years ago
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Maβ¦β63Updated 4 years ago
- A 3D U-Net Based Solution to BraTS 2019 in Kerasβ50Updated 4 years ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.β25Updated last year
- Hierarchical probabilistic 3D U-Net, with attention mechanisms (βππ΅π΅π¦π―π΅πͺπ°π― π-ππ¦π΅, ππππ¦π΄ππ¦π΅) and a nested decoder strβ¦β40Updated 3 years ago
- Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.β87Updated 6 months ago
- Data, notebooks, and articles associated with the RSNA AI Deep Learning Lab at RSNA 2021β80Updated 2 years ago
- DeepBleed: 3D Volumetric Intracranial Hemorrhage Segmentation for Clinical Trialsβ27Updated last year