A repository of update in molecular dynamics field by recent progress in machine learning and deep learning.
☆12Oct 20, 2019Updated 6 years ago
Alternatives and similar repositories for mldl-md-dynamics
Users that are interested in mldl-md-dynamics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The SimSite3D Software tools are designed to quickly search a database of three dimensional structures, in Protein Data Bank format, with…☆11Oct 18, 2018Updated 7 years ago
- Gigabase: Synthetic Biology Cell Modeling Project☆19Nov 3, 2013Updated 12 years ago
- Some demos using Nvidia RAPIDS for Cheminformatics☆13Aug 17, 2020Updated 5 years ago
- The App Store for VMD extensions.☆14Jan 14, 2023Updated 3 years ago
- Identifying silly molecules☆17May 12, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ManifoldEM Python suite☆17Nov 22, 2024Updated last year
- Various scripts for quantum chemistry (mainly ORCA)☆15Feb 6, 2025Updated last year
- ☆24Jun 16, 2025Updated 9 months ago
- Code to accompany "Practical Cheminformatics With Open Source Software"☆16Feb 24, 2022Updated 4 years ago
- aimmd (AI for Molecular Mechanism Discovery) autonomously steers (a large number of) molecular dynamics simulations to efficiently sample…☆20Nov 22, 2025Updated 4 months ago
- Advanced tutorials for WESTPA 2.0☆15Feb 27, 2026Updated last month
- RT2 Lab website, built with Jekyll.☆15Apr 12, 2023Updated 2 years ago
- ☆12Jul 5, 2024Updated last year
- Instructions for Building Software on Various Platforms☆17May 12, 2025Updated 10 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- An implementation of the Solubility Forecast Index (SFI)☆24Oct 6, 2025Updated 5 months ago
- Yet another ML method comparison☆16Nov 20, 2022Updated 3 years ago
- ChEMBL Similarity Search☆18Nov 28, 2020Updated 5 years ago
- Enhanced sampling methods for molecular dynamics simulations☆43Dec 16, 2022Updated 3 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Feb 11, 2021Updated 5 years ago
- Pytorch code for Sampling in Combinatorial Spaces with SurVAE Flow Augmented MCMC☆11Mar 1, 2021Updated 5 years ago
- ☆18Jul 6, 2023Updated 2 years ago
- Tutorials and additional documentation for the WESTPA suite☆16Oct 20, 2025Updated 5 months ago
- Python script to scrape PubChem for chemical uses.☆18Apr 24, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Software tools for fragment-based drug discovery (FBDD)☆27Apr 6, 2020Updated 5 years ago
- ☆23Jan 1, 2026Updated 2 months ago
- DLSCORE: A deep learning based scoring function for predicting protein-ligand binding affinity☆48Mar 24, 2023Updated 3 years ago
- Resources for Learning Cheminformatics with the RDKit☆19Apr 7, 2019Updated 6 years ago
- Learning free energy landscapes using artificial neural networks☆14Nov 30, 2017Updated 8 years ago
- Rust implementation of Peter Shirley's "Ray Tracing: The Rest Of Your Life"☆15Jun 30, 2022Updated 3 years ago
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆24Jun 8, 2024Updated last year
- A portable simulation of a typical integrated advanced life support system in a typical space mission scenario with malfunctions and pert…☆20Jan 21, 2026Updated 2 months ago
- ☆11Oct 25, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- K-means clustering☆22Sep 7, 2021Updated 4 years ago
- A deep learning-based framework to uniquely identify an uncorrelated, isometric and meaningful latent representation.☆20Sep 12, 2023Updated 2 years ago
- ☆15Apr 7, 2022Updated 3 years ago
- A collection of scripts for pairing OVITO with freud and other Glotzer lab packages☆16Mar 19, 2026Updated last week
- ☆21Dec 11, 2024Updated last year
- Jupyter book and content for "Machine Learning for Molecular Dynamics" course☆13Apr 7, 2022Updated 3 years ago
- repository associated to our pipeline for lipid dynamics☆15Jun 17, 2024Updated last year