Alternatives and similar repositories for HS2

Users that are interested in HS2 are comparing it to the libraries listed below

• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆119Updated last year
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated 2 years ago
• SpikeInterface / spiketoolkit
  Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
  ☆50Updated 3 years ago
• NeurodataWithoutBorders / matnwb
  A Matlab interface for reading and writing NWB files
  ☆55Updated this week
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 5 years ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆63Updated this week
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆128Updated last month
• pillowlab / GLMspiketraintutorial_python
  ☆57Updated 2 years ago
• pillowlab / GLMspiketraintutorial
  Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
  ☆94Updated 3 years ago
• slinderman / ml4nd
  Machine Learning Methods for Neural Data Analysis
  ☆19Updated 3 months ago
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 4 years ago
• cortex-lab / neuropixels
  Information about Neuropixels electrode arrays
  ☆92Updated 8 months ago
• jniediek / combinato
  Automatic spike sorting, cluster visualization, spike sorting GUIs
  ☆44Updated last year
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆129Updated last year
• Eden-Kramer-Lab / replay_trajectory_classification
  State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
  ☆49Updated 11 months ago
• flatironinstitute / spikeforest2
  SpikeForest -- spike sorting analysis for website -- version 2
  ☆34Updated 2 years ago
• open-ephys / analysis-tools
  Archived code for reading data saved by the Open Ephys GUI
  ☆61Updated 2 years ago
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆43Updated 6 years ago
• flatironinstitute / mountainlab-js
  MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting softwar…
  ☆44Updated 6 years ago
• scratcharchive / mountainsort_examples
  Examples of using MountainSort spike sorting software.
  ☆28Updated 6 years ago
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆50Updated 3 weeks ago
• lfads / lfads-run-manager
  Matlab interface for Latent Factor Analysis via Dynamical Systems (LFADS)
  ☆50Updated 3 years ago
• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆102Updated last week
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆71Updated 5 years ago
• murthylab / GLMHMM
  ☆24Updated 5 years ago
• SpikeInterface / spiketutorials
  Tutorials for using SpikeInterface on extracellular datasets.
  ☆66Updated last year
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆102Updated last week
• spyking-circus / spyking-circus
  Fast and scalable spike sorting in python
  ☆91Updated last month
• zashwood / glm-hmm
  Code to reproduce figures for "Mice alternate between discrete strategies during perceptual decision-making" from Ashwood, Roy, Stone, IB…
  ☆50Updated 2 years ago
• EnnyvanBeest / UnitMatch
  Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days
  ☆66Updated this week