Alternatives and similar repositories for HS2

Users that are interested in HS2 are comparing it to the libraries listed below

• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆123Updated last year
• pillowlab / GLMspiketraintutorial_python
  ☆59Updated 3 years ago
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆43Updated 6 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 6 years ago
• buzsakilab / buzcode
  Code for internal lab sharing - polishing has started but is by no means complete
  ☆130Updated last year
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆137Updated 4 months ago
• cortex-lab / neuropixels
  Information about Neuropixels electrode arrays
  ☆96Updated 10 months ago
• pillowlab / GLMspiketraintutorial
  Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
  ☆96Updated 3 years ago
• SpikeInterface / spiketoolkit
  Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
  ☆50Updated 3 years ago
• jniediek / combinato
  Automatic spike sorting, cluster visualization, spike sorting GUIs
  ☆45Updated last month
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated 2 years ago
• spyking-circus / spyking-circus
  Fast and scalable spike sorting in python
  ☆95Updated 3 months ago
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 4 years ago
• rajanlab / CURBD
  Code to train and analyze multi-region data-constrained RNNs and perform Current-Based Decomposition (CURBD)
  ☆54Updated 4 years ago
• pillowlab / neuroGLM
  Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
  ☆71Updated 5 years ago
• NeuralEnsemble / elephant
  Elephant is the Electrophysiology Analysis Toolkit
  ☆223Updated this week
• kwikteam / klusta
  Automatic spike sorting up to 64 channels
  ☆53Updated 4 years ago
• catniplab / NPGLM
  non-parametric inference for convolutional filters in poisson glms
  ☆13Updated 4 years ago
• Eden-Kramer-Lab / replay_trajectory_classification
  State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
  ☆50Updated last month
• flatironinstitute / nemos
  NEural MOdelS, a statistical modeling framework for neuroscience.
  ☆108Updated this week
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆50Updated 2 months ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆63Updated this week
• NeurodataWithoutBorders / matnwb
  A Matlab interface for reading and writing NWB files
  ☆55Updated this week
• open-ephys / analysis-tools
  Archived code for reading data saved by the Open Ephys GUI
  ☆60Updated 2 years ago
• arthur-pe / slicetca
  Library to perform Slice Tensor Component Analysis (sliceTCA)
  ☆55Updated 7 months ago
• bantin / jPCA
  jPCA for Neural Data Analysis in Python
  ☆50Updated 2 years ago
• SpikeInterface / spiketutorials
  Tutorials for using SpikeInterface on extracellular datasets.
  ☆67Updated last year
• Eden-Kramer-Lab / ripple_detection
  Tools for identifying sharp wave ripple events using LFPs
  ☆40Updated 2 weeks ago
• paninski-lab / yass
  YASS: Yet Another Spike Sorter
  ☆70Updated 3 years ago
• flatironinstitute / mountainlab-js
  MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting softwar…
  ☆44Updated 6 years ago