dwave-examples / rna-foldingLinks
Finds the optimal stem configuration of an RNA sequence using the LeapHybridCQMSampler.
☆17Updated 2 years ago
Alternatives and similar repositories for rna-folding
Users that are interested in rna-folding are comparing it to the libraries listed below
Sorting:
- A deep learning method for the prediction of internal ribosome entry sites (IRES) of circRNAs☆17Updated 4 months ago
- Quantum Gene Regulatory Networks with Application to Single-cell Data☆20Updated 9 months ago
- Integer programming based prediction of RNA secondary structures with pseudoknots☆21Updated this week
- QBioCode is a suite of computational resources to support quantum applications in healthcare and life science data.☆31Updated 2 weeks ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆96Updated 2 years ago
- A modular compiler for biological chemical reaction networks☆48Updated 2 weeks ago
- ☆39Updated 4 years ago
- Python package for analyzing and visualizing iModulons☆14Updated 2 weeks ago
- A collection of resources for Deep Learning in Python for Life Sciences (with focus on biotech and pharma).☆144Updated 2 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Release of the whole cell E. coli model.☆72Updated 11 months ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Updated 3 years ago
- Unified biological sequence manipulation in Python☆207Updated last year
- Create force-directed graphs of RNA secondary structures.☆109Updated 5 years ago
- A machine learning tool to improve the effectiveness of strain engineering in synthetic biology☆59Updated last week
- Automated machine learning for analyzing, interpreting, and designing biological sequences☆172Updated 2 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆179Updated 3 weeks ago
- Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your co…☆74Updated 2 years ago
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics☆137Updated 3 weeks ago
- The new source code of the LinearFold, linear-time prediction for RNA secondary structures☆183Updated last year
- Eterna100-V2 benchmarking results and scripts☆13Updated last month
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆50Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- surrogate quantitative interpretability for deepnets☆24Updated 3 months ago
- Cello v2 is the continuation of the Cello genetic circuit design software.☆64Updated 3 years ago
- Protein structure comparison tools such as SSAP and SNAP☆66Updated 2 years ago
- Draw RNA secondary structures in python.☆49Updated 5 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago