datreant / MDSynthesisLinks
a logistics and persistence engine for the analysis of molecular dynamics trajectories
☆30Updated 5 years ago
Alternatives and similar repositories for MDSynthesis
Users that are interested in MDSynthesis are comparing it to the libraries listed below
Sorting:
- Python bindings for TNG file format☆13Updated 8 months ago
- MD trajectory server☆34Updated 2 years ago
- For discussing and aggregating data for force field development☆15Updated 8 years ago
- An open set of tools for automating tasks relating to small molecules☆67Updated 3 years ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Updated 11 months ago
- How to analyze molecular dynamics data with PyEMMA☆76Updated 6 years ago
- Chemical perception tree automated exploration tool.☆19Updated 6 years ago
- Sire Molecular Simulations Framework☆96Updated 2 years ago
- Reads Gromacs EDR file to populate a pandas dataframe☆33Updated 8 months ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- Source code for HOLE program.☆35Updated 11 months ago
- Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.☆25Updated 4 years ago
- Simplified and standard interface to a number of cheminformatics toolkits☆88Updated last year
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- Physical validation of molecular simulations☆56Updated last month
- Dihedral scanner with wavefront propagation☆34Updated 3 months ago
- Parallel algorithms for MDAnalysis☆31Updated last year
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Updated 3 years ago
- Main code repository for FATSLiM☆21Updated 3 years ago
- Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling☆33Updated last month
- Best Practices article intended for LiveCoMS☆41Updated 5 years ago
- Copernicus☆17Updated 7 years ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- Experimental small molecule hydration free energy dataset☆30Updated 3 years ago
- A physical property evaluation toolkit from the Open Forcefield Consortium.☆56Updated this week
- MDAnalysis Tutorial at the 2015 CECAM Macromolecular simulation software workshop☆12Updated 9 years ago
- Toolkit for free-energy calculation setup/analysis and biomolecular structure handling☆64Updated 4 years ago
- Calculation of water/solvent partition coefficients with Gromacs.☆28Updated 9 months ago
- This software allows users to perform statistical test to determine if a given molecular simulation is consistent with the thermodynamic …☆14Updated 7 years ago
- Implementation of various machine learning representations for molecules☆24Updated 3 years ago