markovmodel / pyemma_tutorialsLinks
How to analyze molecular dynamics data with PyEMMA
☆80Updated 6 years ago
Alternatives and similar repositories for pyemma_tutorials
Users that are interested in pyemma_tutorials are comparing it to the libraries listed below
Sorting:
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- WESTPA: The Weighted Ensemble Simulation Toolkit with Parallelization and Analysis☆207Updated this week
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Updated last year
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Updated 4 years ago
- learning coarse-grained force fields☆64Updated 3 years ago
- A Python toolkit for the analyis of lipid membrane simulations☆33Updated 3 weeks ago
- Physical validation of molecular simulations☆57Updated last month
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆117Updated 6 years ago
- LOOS: a lightweight object-oriented structure analysis library☆125Updated 3 weeks ago
- Best Practices article intended for LiveCoMS☆42Updated 5 years ago
- OpenMM plugin to interface with PLUMED☆70Updated last week
- Main code repository for FATSLiM☆23Updated 3 years ago
- A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆44Updated 4 years ago
- Best practice document for alchemical free energy calculations going to livecoms journal☆79Updated last week
- An open source Python framework for transition interface and path sampling calculations.☆114Updated 5 months ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆55Updated last year
- OpenMM plugin to define forces with neural networks☆32Updated 5 years ago
- A stripped-down set of just antechamber, sqm, and tleap.☆33Updated 4 years ago
- psi4+RDKit☆104Updated 6 months ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆44Updated 5 years ago
- High level API for using machine learning models in OpenMM simulations☆132Updated 3 weeks ago
- ☆20Updated 5 years ago
- Parallel algorithms for MDAnalysis☆31Updated last year
- This repository includes pKa data obtained from measurements in aqueous solutions, digitized and curated from reference books published b…☆73Updated this week
- Sire Molecular Simulations Framework☆96Updated 2 years ago
- A comprehensive toolkit for predicting free energies☆58Updated 10 months ago
- Experimental and calculated small molecule hydration free energies☆125Updated 3 years ago
- Using supervised machine learning to build collective variables for accelerated sampling☆28Updated 7 years ago
- Calculation of water/solvent partition coefficients with Gromacs.☆28Updated last year