LoLab-MSM / PyBILTLinks
Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.
☆25Updated 4 years ago
Alternatives and similar repositories for PyBILT
Users that are interested in PyBILT are comparing it to the libraries listed below
Sorting:
- Main code repository for FATSLiM☆21Updated 3 years ago
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Updated 9 months ago
- A Python toolkit for the analyis of lipid membrane simulations☆30Updated 2 months ago
- Physical validation of molecular simulations☆56Updated last month
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- Experimental small molecule hydration free energy dataset☆30Updated 3 years ago
- A fast solver for large scale MBAR/UWHAM equations☆39Updated 9 months ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆60Updated last year
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆29Updated 8 months ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated last year
- Analyse Rotational Diffusion Tensor from MD Simulations☆18Updated 7 months ago
- Fast PBC wrapping and unwrapping for VMD☆23Updated 6 months ago
- ☆54Updated 2 years ago
- Best practice document for alchemical free energy calculations going to livecoms journal☆73Updated this week
- Benchmark sets for binding free energy calculations: Perpetual review paper, discussion, datasets, and standards☆42Updated 3 years ago
- Best Practices article intended for LiveCoMS☆41Updated 5 years ago
- Compare optimized geometries and energies from various force fields with respect to a QM reference.☆13Updated 4 years ago
- pKa estimates for proteins using an ensemble approach☆28Updated 7 months ago
- Calculation of water/solvent partition coefficients with Gromacs.☆27Updated 7 months ago
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Updated 3 years ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- Spectral Gap Optimization of Parameters☆18Updated 5 years ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- 📐 Symmetry-corrected RMSD in Python☆98Updated 3 weeks ago
- Automatic MARTINI parametrization of small organic molecules☆66Updated last week
- Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling☆33Updated 3 weeks ago
- Python Tools for NAMD☆21Updated 3 weeks ago
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆46Updated 8 months ago
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆114Updated 6 years ago