LoLab-MSM / PyBILTLinks
Toolkit to aid in the analysis of lipid bilayer molecular simulation trajectories.
☆25Updated 4 years ago
Alternatives and similar repositories for PyBILT
Users that are interested in PyBILT are comparing it to the libraries listed below
Sorting:
- Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations☆20Updated 7 years ago
- Python Tools for NAMD☆21Updated 3 months ago
- Quickly generate, start and analyze benchmarks for molecular dynamics simulations.☆80Updated 11 months ago
- Experimental small molecule hydration free energy dataset☆30Updated 3 years ago
- Best Practices article intended for LiveCoMS☆41Updated 5 years ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- Physical validation of molecular simulations☆56Updated last month
- Main code repository for FATSLiM☆21Updated 3 years ago
- A general small molecule force field descended from AMBER99 and parm@Frosst, available in the SMIRNOFF format☆29Updated 10 months ago
- (outdated) fork of https://gitlab.com/gromacs/gromacs☆53Updated 2 years ago
- A python module for flexible Poisson-Boltzmann based pKa calculations with proton tautomerism☆61Updated last year
- Bayesian tools for fitting molecular mechanics torsion parameters to quantum chemical data.☆21Updated 3 years ago
- A document for the Living Journal of Computational Molecular Science (LiveCoMS) which describes basic training for molecular simulations …☆115Updated 6 years ago
- Fast PBC wrapping and unwrapping for VMD☆23Updated 8 months ago
- A Python toolkit for the analyis of lipid membrane simulations☆31Updated 2 weeks ago
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- Compare optimized geometries and energies from various force fields with respect to a QM reference.☆13Updated 4 years ago
- Applications of nonequilibrium candidate Monte Carlo (NCMC) to ligand binding mode sampling☆33Updated last month
- Reads Gromacs EDR file to populate a pandas dataframe☆33Updated 8 months ago
- Best practice document for alchemical free energy calculations going to livecoms journal☆75Updated this week
- Calculation of water/solvent partition coefficients with Gromacs.☆28Updated 9 months ago
- Package for consistent reporting of relative free energy results☆39Updated last month
- Suite of programs to perform non-linear dimensionality reduction -- sketch-map in particular☆46Updated 10 months ago
- A fast solver for large scale MBAR/UWHAM equations☆39Updated 11 months ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆53Updated last year
- OpenMM plugin to define forces with neural networks☆33Updated 5 years ago
- In-house tools for setting up arbitrary solute-solvent mixtures for simulation in GROMACS, Amber, OpenMM or other codes☆32Updated 4 years ago
- Advanced toolkit for binding free energy calculations☆33Updated last month
- Dihedral scanner with wavefront propagation☆34Updated 3 months ago
- How to analyze molecular dynamics data with PyEMMA☆76Updated 6 years ago