WuraolaOyewusi / How-to-use-ScispaCy-for-Biomedical-Named-Entity-Recognition-Abbreviation-Resolution-and-link-UMLSLinks
☆10Updated 6 years ago
Alternatives and similar repositories for How-to-use-ScispaCy-for-Biomedical-Named-Entity-Recognition-Abbreviation-Resolution-and-link-UMLS
Users that are interested in How-to-use-ScispaCy-for-Biomedical-Named-Entity-Recognition-Abbreviation-Resolution-and-link-UMLS are comparing it to the libraries listed below
Sorting:
- Python wraper for MetaMap☆173Updated 5 years ago
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆333Updated 3 years ago
- ☆91Updated 6 years ago
- BLUE benchmark consists of five different biomedicine text-mining tasks with ten corpora.☆297Updated 3 years ago
- System for Medical Concept Extraction and Linking☆413Updated last year
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 3 months ago
- Conversion from brat-flavored standoff to CoNLL format☆53Updated 4 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆178Updated 3 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- ☆232Updated 8 years ago
- BioBert Pytorch☆116Updated 2 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆171Updated 2 years ago
- Code for the emrQA question answering dataset☆149Updated 3 years ago
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated 2 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆46Updated 4 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆162Updated 4 years ago
- Pre-trained Language Model for Biomedical Question Answering☆123Updated 2 years ago
- This is the code for Negation and Speculation Cue Detection and Scope Resolution using BERT, XLNet and RoBERTa☆34Updated 4 years ago
- Named Entity Recognition for biomedical entities☆48Updated 2 years ago
- ☆35Updated 4 years ago
- ☆99Updated 3 years ago
- BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).☆577Updated 2 years ago
- BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences☆595Updated 2 years ago
- Code for AttentionMeSH☆17Updated 6 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 6 years ago
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆76Updated 2 years ago
- ☆122Updated 7 years ago
- PubMed PICO Element Detection Dataset☆58Updated 7 years ago
- Clinical Named Entity Recognition system (CliNER) is an open-source natural language processing system for named entity recognition in cl…☆234Updated 5 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆40Updated 5 years ago