WuraolaOyewusi / How-to-use-ScispaCy-for-Biomedical-Named-Entity-Recognition-Abbreviation-Resolution-and-link-UMLS
☆10Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for How-to-use-ScispaCy-for-Biomedical-Named-Entity-Recognition-Abbreviation-Resolution-and-link-UMLS
- This is a repository for annotation data for the THYME Project, a clinical natural language processing project dedicated to extracting us…☆37Updated 8 years ago
- ☆94Updated 2 years ago
- A neural named entity recognition and multi-type normalization tool for biomedical text mining☆173Updated 2 years ago
- A clinical BERT-based NLP tool for parsing clinical trial abstracts following the PICO framework☆44Updated 4 years ago
- ☆90Updated 5 years ago
- BioBert Pytorch☆116Updated last year
- Python wraper for MetaMap☆170Updated 4 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆37Updated 6 years ago
- Named Entity Recognition for biomedical entities☆47Updated last year
- Pre-trained Language Model for Biomedical Question Answering☆122Updated last year
- MedType: Improving Medical Entity Linking with Semantic Type Prediction☆116Updated last year
- A corpus of Biomedical papers annotated with mentions of UMLS entities.☆312Updated 3 years ago
- Adversarial Learning of Knowledge Embeddings for the Unified Medical Language System☆39Updated 4 years ago
- ☆70Updated 10 months ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆156Updated 3 years ago
- Abbreviation definition dection library trained on PubMed abstracts☆45Updated 4 years ago
- Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)☆33Updated 5 years ago
- A fine-tuned BERT using EHR notes.☆14Updated 5 years ago
- MedNLI - A Natural Language Inference Dataset For The Clinical Domain☆123Updated last year
- PubMed PICO Element Detection Dataset☆55Updated 6 years ago
- Conversion from brat-flavored standoff to CoNLL format☆50Updated 3 years ago
- Challenge on Textual Inference and Question Entailment in the Medical Domain https://sites.google.com/view/mediqa2019☆51Updated last year
- Repository used to collect biomedical corpus on the Internet!☆31Updated 4 years ago
- CollaboNet for Biomedical Named Entity Recognition☆48Updated 5 years ago
- ☆34Updated 3 years ago
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆160Updated last year
- Code for the emrQA question answering dataset☆143Updated 2 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆144Updated last year
- Python library for converting between BioNLP formats☆20Updated last year
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆73Updated last year