biplob1ly / TransICDLinks
Transformer based ICD Coding model
☆18Updated 4 years ago
Alternatives and similar repositories for TransICD
Users that are interested in TransICD are comparing it to the libraries listed below
Sorting:
- A Label Attention Model for ICD Coding from Clinical Text☆69Updated 2 years ago
- Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding [ACL 2022]☆52Updated 2 years ago
- A project for developing transformer-based models for clinical relation extraction☆128Updated last year
- ☆22Updated 3 years ago
- Code for the EACL 2021 Paper: Clinical Outcome Prediction from Admission Notes using Self-Supervised Knowledge Integration☆95Updated 10 months ago
- ☆38Updated 3 years ago
- Implementation of the BLUE benchmark with Transformers.☆20Updated last year
- BioELECTRA☆50Updated 3 years ago
- Implementation and demo of explainable coding of clinical notes with Hierarchical Label-wise Attention Networks (HLAN)☆61Updated 2 years ago
- We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.☆160Updated 3 years ago
- a library for named entity recognition developed by UF HOBI NLP lab featuring SOTA algorithms☆147Updated last year
- Improving Biomedical Pretrained Language Models with Knowledge [BioNLP 2021]☆65Updated 2 years ago
- Pre-trained word embeddings using the text of published clinical case reports.☆14Updated 5 years ago
- Code and dataset of EMNLP 2020 paper "Infusing Disease Knowledge into BERT for Health Question Answering, Medical Inference and Disease N…☆69Updated 3 years ago
- auto icd coding with prompt☆49Updated last year
- ACL'2020: Biomedical Entity Representations with Synonym Marginalization☆167Updated last year
- ICD-BERT: Multi-label Classification of ICD-10 Codes with BERT (CLEF 2019)☆74Updated 2 years ago
- A collection of annotated biomedical corpora, which can be used for training supervised machine learning methods for various tasks in bio…☆36Updated 6 years ago
- CODER: Knowledge infused cross-lingual medical term embedding for term normalization. [JBI, ACL-BioNLP 2022]☆78Updated 2 years ago
- ☆33Updated 2 years ago
- [NAACL'21 & ACL'21] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.☆190Updated 2 years ago
- Corpus of Online Medical EnTities: the cometA corpus☆50Updated 3 months ago
- Code for the paper "Clinical Reading Comprehension: A Thorough Analysis of the emrQA Dataset" (ACL 2020)☆17Updated 5 years ago
- Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning [NAACL 2022]☆19Updated 2 years ago
- Benchmarking for Biomedical Natural Language Processing Tasks with a Domain Specific ALBERT☆29Updated 3 years ago
- Pre-trained Language Model for Biomedical Question Answering☆123Updated 2 years ago
- Multitask Learning with Pretrained Transformers☆40Updated 4 years ago
- ☆25Updated 2 years ago
- The corresponding code for our paper: A sequence-to-sequence approach for document-level relation extraction.☆63Updated last year
- Self-supervised NER prototype - updated version (69 entity types - 17 broad entity groups). Uses pretrained BERT models with no fine tuni…☆79Updated 2 years ago