bio2rdf / bio2rdf-scripts
Scripts that Bio2RDF users have created to generate RDF versions of scientific datasets
☆134Updated 3 years ago
Alternatives and similar repositories for bio2rdf-scripts
Users that are interested in bio2rdf-scripts are comparing it to the libraries listed below
Sorting:
- 📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures☆67Updated this week
- Github repo for the Experimental Factor Ontology (EFO)☆57Updated this week
- RO is an ontology of relations for use with biological ontologies☆95Updated this week
- python library for working with ontologies and ontology associations☆129Updated 3 months ago
- ☆16Updated 10 months ago
- Evidence & Conclusion Ontology development site: Use ISSUES to request terms. See WIKI for how to request terms. See README for how to c…☆50Updated 2 weeks ago
- A tutorial on using Open Biological and Biomedical Ontologies (OBO)☆59Updated 6 years ago
- An instance of KG Hub to produce a knowledge graph for COVID-19 response.☆81Updated last year
- Turning Ontologies Plus Annotation Properties into Vectors☆35Updated 4 years ago
- These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This…☆86Updated 8 months ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆53Updated 2 weeks ago
- Medical action ontology☆56Updated 3 weeks ago
- A simple system for specifying OWL class design patterns for OBO-ish ontologies.☆44Updated 3 years ago
- KGX is a Python library for exchanging Knowledge Graphs☆124Updated this week
- OWLTools☆112Updated 8 months ago
- The Ontology for Biomedical Investigations☆79Updated last week
- Ontology Lookup Service from SPOT at EBI☆98Updated 2 years ago
- Utility for working with DOSDP design patterns and OWL ontologies☆27Updated 9 months ago
- OBO Organized Knowledge: Training materials for becoming an OBO engineer☆108Updated 2 weeks ago
- Ontology for representing scientific evidence and provenance information☆50Updated 9 months ago
- Integrated OBO ontology store☆46Updated this week
- PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models☆188Updated last year
- mOWL: Machine Learning library with Ontologies☆66Updated 3 months ago
- A package to transform all OBO ontologies into KGX TSV format and OBO json, and put the transformed graph in KGhub☆32Updated last year
- A computational library for learning and evaluating biological knowledge graph embeddings - please see the main PyKEEN repo at https://gi…☆45Updated 2 years ago
- Transforming SemRep Predications into an Open Biomedical Linked Data Resource☆11Updated 7 years ago
- Ontology Tutorial☆72Updated 2 years ago
- PATO - the Phenotype And Trait Ontology☆59Updated 2 weeks ago
- Modular environmental exposures ontology☆31Updated last year
- Repository for Apollo-SV ontology. Versioning Apollo-SV independently of the software was made easiest by having it as a separate reposi…☆10Updated 4 months ago