A differentiable JAX-based framework for vertex modeling and inverse design of epithelial tissues
☆22Jul 30, 2026Updated 3 weeks ago
Alternatives and similar repositories for VertAX
Users that are interested in VertAX are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jun 29, 2021Updated 5 years ago
- A web-based, time-series visualizer for tracked segmented data.☆18Updated this week
- MultiCell: geometric learning in multicellular development☆28Dec 24, 2025Updated 8 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- Code of "A Geometric Perspective on Variational Autoencoders" (NeurIPS 2022)☆16Nov 19, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ngio is a Python library to streamline OME-Zarr image analysis workflows.☆50Updated this week
- ☆36May 15, 2026Updated 3 months ago
- Rust extension module for FIJI-like colormapping and channel blending☆21Jun 24, 2026Updated 2 months ago
- ☆21Updated this week
- Generalized sparse regression for continuous and discrete data☆16Aug 12, 2026Updated 2 weeks ago
- ☆12Jun 29, 2018Updated 8 years ago
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆38Updated this week
- Tutorial on "Simulations of pattern formation in biological cells"☆14Apr 18, 2025Updated last year
- scDataset: Scalable Data Loading for Deep Learning on Large-Scale Single-Cell Omics☆52Jan 30, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- SCREW: A Reproducible Workflow for Single-Cell Epigenomics☆11Oct 22, 2017Updated 8 years ago
- Fiji macro for cutting confocal stacks at various depths relative to surface signal☆10Sep 28, 2020Updated 5 years ago
- ImgLib2 integration for ClearVolume☆12Jun 11, 2026Updated 2 months ago
- General Image Analysis of Nuclei-containing Images☆10Jul 11, 2025Updated last year
- R interface to query UCSC bigWig files☆14Aug 23, 2020Updated 6 years ago
- A MATLAB toolbox for exporting publication quality figures☆13Nov 10, 2016Updated 9 years ago
- A beamer template which can applied to any college by small modifications.☆13Feb 19, 2025Updated last year
- Rxiv-Maker is a GitHub-native framework that converts markdown into a publication-ready PDF. It automates scientific preprint generation …☆40Aug 17, 2026Updated last week
- ☆16Jul 17, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Interacting Active Surfaces☆10Jul 12, 2022Updated 4 years ago
- A template repo used to make new napari plugins☆42Aug 3, 2026Updated 3 weeks ago
- Use MATLAB with Codecov☆11Mar 31, 2026Updated 4 months ago
- An introduction to OME-Zarr for big bioimaging data☆28Aug 10, 2026Updated 2 weeks ago
- ☆14Sep 29, 2020Updated 5 years ago
- ☆14Feb 21, 2024Updated 2 years ago
- ☆15Jul 10, 2018Updated 8 years ago
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆75Updated this week
- ☆15Mar 10, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Source code and examples for searching structures using RANGE☆15Updated this week
- ☆59Apr 20, 2026Updated 4 months ago
- Graph-based framework to manipulate and analyze cell lineages from cell tracking data☆24Aug 8, 2026Updated 3 weeks ago
- ☆11Jul 31, 2019Updated 7 years ago
- Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA☆27Mar 20, 2026Updated 5 months ago
- Edge Weighted Centroidal Voronoi Tessellation☆12May 1, 2014Updated 12 years ago
- Code is my tool, ideas are my fuel.☆36Updated this week