Tierpsy / tierpsy-tracker

Related projects ⓘ

Alternatives and complementary repositories for tierpsy-tracker

• klasma / BaxterAlgorithms
  Software for segmentation, tracking and analysis of cells in microscope image sequences.
  ☆40Updated 7 months ago
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆112Updated 8 months ago
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆52Updated 2 months ago
• royerlab / ultrack
  Cell tracking and segmentation software
  ☆93Updated last week
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆64Updated last week
• brainglobe / cellfinder-core
  Standalone cellfinder cell detection algorithm
  ☆19Updated 10 months ago
• argunsah / SpineS
  Dendritic Spine Analysis Software
  ☆13Updated last year
• Kainmueller-Lab / PatchPerPix
  official implementation of the PatchPerPix instance segmentation method
  ☆27Updated last year
• alexklibisz / deep-calcium
  Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
  ☆28Updated last year
• filippocastelli / pyometiff
  OME-TIFF IO in python
  ☆19Updated 2 months ago
• tractatus / wholebrain
  R package for segmentation, registration and generating web-based brain atlases from microscope images
  ☆86Updated 3 years ago
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆52Updated 2 weeks ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆123Updated this week
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆30Updated last year
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆124Updated this week
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆51Updated last year
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆21Updated 3 months ago
• nitinagarwal / Mouse_Brain_Registration
  Geometry Processing of Conventionally Produced Mouse Brain Slice Images
  ☆7Updated 5 years ago
• neuroethology / MARS
  End-user version of the Mouse Action Recognition System (MARS)
  ☆58Updated 7 months ago
• jiyuuchc / lacss
  A deep learning model for single cell segmentation from microsopy images.
  ☆31Updated this week
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆82Updated last month
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆47Updated 2 weeks ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆33Updated last week
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• neuroethology / MARS_Developer
  For developers and people training MARS models
  ☆16Updated 7 months ago
• brikeats / Cell-Tracking
  Python scripts for tracking cells in fluorescent microscopy.
  ☆11Updated 6 years ago
• smithk / cidre
  A general illumination correction method for optical microscopy.
  ☆37Updated 3 years ago
• lmb-freiburg / Unet-Segmentation
  The U-Net Segmentation plugin for Fiji (ImageJ)
  ☆87Updated 2 years ago
• deepimagej / deepimagej-plugin
  The ImageJ plugin to run deep-learning models
  ☆86Updated this week
• ankilab / DeepD3
  ☆20Updated 3 months ago