'htslib' based 'Duckdb' Extenstion for High Throughput Sequencing File Formats
☆16Aug 4, 2026Updated this week
Alternatives and similar repositories for duckhts
Users that are interested in duckhts are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository to ZIP Plink2 LD files and have random access☆17Updated this week
- Read genomic data files (VCF, BCF, BGEN, PGEN, BED, H5AD, HDF5, DelayedArray) into R/Rcpp in chunks☆16Jul 21, 2026Updated 2 weeks ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- Documentation Repo for tips on using DuckDB with R☆16May 1, 2026Updated 3 months ago
- Inference of differential exon usage in RNA-Seq☆10Apr 18, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 4 years ago
- hard-won lessons from real-world usage of {targets}☆16Dec 3, 2025Updated 8 months ago
- fast and comprehensive k-mer counting package☆19Sep 27, 2021Updated 4 years ago
- Dynamically Generate Quarto Syntax☆25Updated this week
- A Shiny Server implemented in pure R☆21Jan 6, 2026Updated 7 months ago
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated 3 months ago
- Doom in R☆24Jul 8, 2026Updated last month
- ggplot2 extension to add a table to an axis.☆13May 29, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Rare Disease variant reanalysis tool☆73Updated this week
- Sitting Duck is a DuckDB extension that makes Abstract Syntax Trees (ASTs) from source code files quack like data - enabling powerful SQL…☆21Updated this week
- useful command-line tools written to showcase hts-nim☆50Nov 10, 2020Updated 5 years ago
- The Python Tutorials repository is where I share insightful tutorials on data science and analytics using Python, along with helpful Pyth…☆10Mar 17, 2025Updated last year
- GWAS data analysis experiments☆23Jul 1, 2020Updated 6 years ago
- A template to create CVs/Resumes with Quarto☆13Jul 17, 2023Updated 3 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Jul 17, 2026Updated 3 weeks ago
- An agentic AI tool for searching, screening, and ranking NIH funding opportunities based on research interests and proposal relevance.☆26Jul 8, 2026Updated last month
- R to Fortran Transpiler☆184Aug 2, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Repel Visually Similar Colors for Colorblind Users (CRAN)☆11Jul 17, 2026Updated 3 weeks ago
- Handle Strings as Vectors of Characters☆27Nov 7, 2024Updated last year
- Earth Mover's Distance based Similarity Join on Hadoop☆12Mar 9, 2016Updated 10 years ago
- Turn a generator into a coroutine with decorators!☆16Apr 15, 2014Updated 12 years ago
- Patterned Fills for R's ggplot2 and grid Graphics☆13Feb 13, 2026Updated 5 months ago
- The framework for a portable shiny app and a working example☆11Sep 26, 2017Updated 8 years ago
- API-first variant triage pipeline combining genomic filtering, annotation, and LLM-driven interpretation for clinical genomics workflows☆20Apr 28, 2026Updated 3 months ago
- Demo App: https://rinpharma.shinyapps.io/clinsight/ Development version website: https://openpharma.github.io/clinsight/dev☆13Mar 3, 2026Updated 5 months ago
- Lucene Chemical Index based on RDKit functionality.☆15Aug 26, 2016Updated 9 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Abstraction layer for OSC controllers in SuperCollider☆14Jul 1, 2022Updated 4 years ago
- ☆19Mar 12, 2025Updated last year
- OCaml record fields as first class values☆22Jul 10, 2026Updated last month
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆23Dec 2, 2025Updated 8 months ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 8 months ago
- tidy processing of biological sequences in R☆44Jan 8, 2025Updated last year
- Visualise interstrain recombination from environmental samples.☆28Apr 18, 2019Updated 7 years ago