MD_quick_plot helps you plot MD simulation data figures using structural and trajectory files. Compatible formats include GROMACS, AMBER, CHARMM, and NAMD.
☆25Jul 26, 2026Updated last month
Alternatives and similar repositories for MD_quick_plot
Users that are interested in MD_quick_plot are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Aug 18, 2026Updated last month
- A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling metho…☆25Sep 26, 2024Updated last year
- 👑 A lightweight molecular dynamics pipeline for running protein simulations on portable hardware☆64Mar 23, 2026Updated 5 months ago
- ☆35Jul 18, 2026Updated 2 months ago
- PocketMaster is a flexible and automated tool for analyzing, clustering, and visualizing protein binding sites. It allows you to quickly …☆19Feb 22, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆19Apr 13, 2026Updated 5 months ago
- Software for automated molecular dynamics exploration☆132Updated this week
- The package of ProBuilder from Longxing Cao lab☆26Jan 19, 2026Updated 8 months ago
- A toolbox for Alphafold-related workflows☆23Sep 7, 2026Updated last week
- Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction☆94Oct 6, 2025Updated 11 months ago
- CHAPERONg: An automated pipeline for GROMACS MD simulations and trajectory analyses☆67Aug 2, 2025Updated last year
- FeatureDock is a protein-ligand docking software guided by physicochemical feature-based local environment learning using Transformer☆43Oct 9, 2024Updated last year
- Learning free energy landscapes using artificial neural networks☆15Nov 30, 2017Updated 8 years ago
- Combines FRESEAN mode analysis of a protein (based on a CG representation) with enhanced sampling using metadynamics☆17May 7, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast protein backbone flexibility prediction model☆41Sep 9, 2026Updated last week
- ☆51Jun 15, 2026Updated 3 months ago
- 📽️ Game-changing scripts for molecular visualization — produce Hollywood-quality visuals with scientific accuracy and cinematic impact☆121Jun 10, 2026Updated 3 months ago
- PDB-CAT aims to automatically categorize the mmCIF PDB structures based on the type of interaction between atoms in the protein and the l…☆16Jan 21, 2026Updated 7 months ago
- Prediction of Protein-Small molecule binding affinities☆22Oct 1, 2025Updated 11 months ago
- Plugin for folding sequences directly in PyMOL☆29Aug 5, 2025Updated last year
- Rapid Generation of Rare Event Pathways Using Direction Guided Adaptive Sampling: From Ligand Unbinding to Protein (Un)Folding☆39Updated this week
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- ☆39Feb 5, 2026Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆11Mar 28, 2024Updated 2 years ago
- ☆78Aug 19, 2026Updated last month
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- ☆47Jan 8, 2026Updated 8 months ago
- Code for running BinderFlow☆66Jun 22, 2026Updated 2 months ago
- A snakemake-based workflow for FEP and MM(PB/GB)SA calculations with GROMACS☆168May 9, 2026Updated 4 months ago
- Repository for molar crate and its dependencies☆61Sep 10, 2026Updated last week
- Longxing Cao's Contact Molecular Surface without pyrosetta☆15May 24, 2026Updated 3 months ago
- ☆19Sep 9, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions☆12Feb 10, 2023Updated 3 years ago
- PandaDock: Physics based Molecular Docking with GNN Scoring☆106Aug 24, 2026Updated 3 weeks ago
- NeuralMD for Protein-ligand Binding Simulation, Nature Communicaitons 2025 https://www.nature.com/articles/s41467-025-67808-z☆51Nov 4, 2025Updated 10 months ago
- ☆46Dec 30, 2025Updated 8 months ago
- ☆97Updated this week
- [𝐧𝐚𝐭𝐮𝐫𝐞 𝐦𝐚𝐜𝐡𝐢𝐧𝐞 𝐢𝐧𝐭𝐞𝐥𝐥𝐢𝐠𝐞𝐧𝐜𝐞] ImmunoStruct enables multimodal deep learning for immunogenicity prediction☆50Mar 5, 2026Updated 6 months ago
- GatorAffinity: Boosting Protein-Ligand Binding Affinity Prediction with Large-Scale Synthetic Structural Data☆36Apr 10, 2026Updated 5 months ago