jaeohshin / fep_tutorialLinks
☆45Updated 3 weeks ago
Alternatives and similar repositories for fep_tutorial
Users that are interested in fep_tutorial are comparing it to the libraries listed below
Sorting:
- ☆65Updated 6 months ago
- Enhanced sampling methods for molecular dynamics simulations☆42Updated 3 years ago
- ☆42Updated last year
- ☆15Updated 3 years ago
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆49Updated 4 years ago
- A package for all physics based/related models☆54Updated last year
- Force Fields☆66Updated last year
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆42Updated 2 months ago
- Robust Equilibration Detection☆26Updated 4 months ago
- ☆62Updated last month
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆74Updated 2 years ago
- MDANCE: O(N) clustering for molecular dynamics. Process 1.5M frames in 40min. 8 specialized algorithms.☆98Updated this week
- Temperature generator for Replica Exchange MD simulations☆30Updated 3 years ago
- OpenMM plugin to interface with PLUMED☆74Updated 2 weeks ago
- AIMNet2: Fast and accurate machine-learned interatomic potential for molecular dynamics simulations☆63Updated last month
- A fast solver for large scale MBAR/UWHAM equations☆40Updated last year
- ☆40Updated 2 years ago
- Reweighted Autoencoded Variational Bayes for Enhanced Sampling (RAVE)☆45Updated 5 years ago
- Martini 3 small molecule database☆69Updated 3 months ago
- Automatic Mutual Information Noise Omission☆15Updated last year
- Collective variables by artificial neural networks☆10Updated 3 years ago
- TrajCast: Force-Free MD Through Autoregressive Equivariant Networks☆59Updated 4 months ago
- Material for the 3rd i-CoMSE Workshop: Methods for Advanced Sampling☆42Updated 2 years ago
- Scripts to interface TorchANI NNP with NAMD☆32Updated 2 years ago
- Density based object completion over PBC.☆30Updated last year
- We provide a set of scripts to calculate native contacts from a MD. Native contacts are determined according to the overlap and rCSU appr…☆16Updated last year
- Repository of the data for PLUMED Masterclass 22.3☆14Updated last year
- A repository containing the build steps for the ccpbiosim workshop on QM/MM☆68Updated last week
- Rethinking Metadynamics: From Bias Potentials to Probability Distributions☆14Updated 2 years ago
- Repository for the 2024 OpenFE industry benchmark efforts☆29Updated 3 months ago