Alternatives and similar repositories for monomers:

Users that are interested in monomers are comparing it to the libraries listed below

• keitaroyam / servalcat
  Structure refinement and validation for crystallography and single particle analysis
  ☆27Updated 2 weeks ago
• tristanic / isolde
  Interactive molecular dynamics based model building into low-resolution crystallographic and cryo-EM maps
  ☆36Updated last month
• maccallumlab / meld
  Modeling with limited data
  ☆56Updated 3 months ago
• olibclarke / chimerax-trimmings
  Useful aliases and startup settings for ChimeraX
  ☆29Updated 6 months ago
• KULL-Centre / CALVADOS
  ☆46Updated 3 months ago
• dseeliger / pmx
  Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
  ☆60Updated 3 years ago
• fhh2626 / BFEE2
  binding free energy estimator 2
  ☆111Updated 3 months ago
• marrink-lab / vermouth-martinize
  Describe and apply transformation on molecular structures and topologies
  ☆107Updated this week
• bestlab / force_fields
  Force fields in various formats
  ☆26Updated 10 months ago
• getcontacts / getcontacts
  Library for computing dynamic non-covalent contact networks in proteins throughout MD Simulation
  ☆108Updated last year
• sulfierry / free_energy_landscape
  The Free Energy Landscape Analysis tool offers a comprehensive suite for analyzing and visualizing the free energy landscape derived from…
  ☆21Updated 3 weeks ago
• tiwarylab / alphafold2rave
  ☆69Updated 8 months ago
• maccallumlab / martini_openmm
  ☆52Updated last year
• fmaschietto / mdigest
  ☆30Updated 4 months ago
• wlsong / PyLipID
  A python toolkit for analysing membrane protein-lipid interactions.
  ☆63Updated last year
• HITS-MCM / gromacs-ramd
  Random Acceleration Molecular Dynamics in GROMACS
  ☆34Updated 7 months ago
• Electrostatics / pdb2pqr
  PDB2PQR - determining titration states, adding missing atoms, and assigning charges/radii to biomolecules.
  ☆137Updated last week
• SBQ-1999 / CryFold
  From cryo-EM density map to atomic structure
  ☆26Updated 3 months ago
• Gallicchio-Lab / openmm-atmmetaforce-plugin
  An OpenMM plugin that implements the Alchemical Transfer Potential
  ☆40Updated last year
• kassonlab / gmxapi
  (outdated) fork of https://gitlab.com/gromacs/gromacs
  ☆53Updated last year
• maxscheurer / pycontact
  Analysis of non-covalent interactions in MD trajectories
  ☆53Updated 2 months ago
• MiaoLab20 / gamd-openmm
  Gaussian Accelerated Molecular Dynamics (GaMD) is a computational method for both unconstrained enhanced sampling and free energy calcula…
  ☆77Updated 9 months ago
• tdgrant1 / denss
  Calculate electron density from a solution scattering profile
  ☆31Updated 3 weeks ago
• ExcitedStates / qfit-3.0
  qFit: Automated and unbiased multi-conformer models from X-ray and EM maps.
  ☆40Updated this week
• rlabduke / MolProbity
  Protein and nucleic acid validation service
  ☆68Updated last year
• isayevlab / pKa-ANI
  Accurate prediction of protein pKa with representation learning
  ☆42Updated 3 weeks ago
• intbio / gromacs_ff
  Trusted force field files for gromacs
  ☆45Updated 4 months ago
• osmart / hole2
  Source code for HOLE program.
  ☆34Updated 6 months ago
• RMeli / spyrmsd
  📐 Symmetry-corrected RMSD in Python
  ☆92Updated 3 months ago
• olibclarke / coot-trimmings
  Python customizations for the macromolecular model building software Coot.
  ☆20Updated last year