LiuLab-Bioelectronics-Harvard / SpikeAgentLinks
SpikeAgent is a multimodal LLM-based AI agent that automates and standardizes the spike sorting pipeline
☆52Updated 4 months ago
Alternatives and similar repositories for SpikeAgent
Users that are interested in SpikeAgent are comparing it to the libraries listed below
Sorting:
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆66Updated this week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆102Updated last week
- A curated list of awesome Neuropixels resources.☆109Updated 2 weeks ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆130Updated 2 months ago
- a visualization method for neural data☆235Updated 4 months ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆103Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 4 months ago
- Code for internal lab sharing - polishing has started but is by no means complete☆129Updated last year
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆119Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆174Updated last month
- Tutorials for using SpikeInterface on extracellular datasets.☆65Updated last year
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆105Updated 8 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆62Updated last month
- pyqt5 dependent applications for IBL sessions☆28Updated this week
- Toolbox for analyzing behavioral videos and neural activity☆59Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated this week
- SpikeGLX recording system GUI [Neuropixels NI]☆93Updated last week
- cortex lab code for electrophysiology☆83Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆53Updated 7 months ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆28Updated 3 weeks ago
- Registration of cells across sessions.☆75Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆48Updated 3 months ago
- ☆53Updated last month
- Code implements the LN model used to describe spike trains of MEC neurons based on the animal's position, head direction, speed, and thet…☆23Updated 3 years ago
- Open Neurophysiology Environment☆20Updated 2 months ago
- Code for neural and behavioral data analysis from the Brain Computation and Behavior Lab, aka AyA Lab, at Cornell University.☆18Updated last week
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.☆12Updated last year
- Python package to handle probe layout, geometry and wiring to device.☆70Updated 3 weeks ago