molecular-neuroimaging / Imaging_Transcriptomics
A package, and script, to perform imaging transcriptomics on a neuroimaging scan.
☆16Updated 9 months ago
Alternatives and similar repositories for Imaging_Transcriptomics:
Users that are interested in Imaging_Transcriptomics are comparing it to the libraries listed below
- Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)☆21Updated 3 years ago
- Toolbox for performing gene set enrichment analysis in Matlab (including ensemble enrichment)☆17Updated last year
- A package, and script, to perform imaging transcriptomics on a neuroimaging scan.☆22Updated 9 months ago
- A toolbox for ensemble-based multimodal gene-category enrichment analysis of human neuroimaging data☆18Updated 2 years ago
- A prediction-based extension of network-based statistics.☆32Updated 2 months ago
- This is the repository for the JuSpace toolbox allowing for cross-modal correlations between imaging data and positron emission tomograph…☆46Updated this week
- Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.☆29Updated 6 years ago
- ☆47Updated 3 years ago
- Code (in Matlab and R) to perform a spherical rotation (permutation) of a parcellated cortical map.☆44Updated last year
- This repository contains a Python implementation of Morphometric INverse Divergence (MIND) calculation for the estimation of structural s…☆31Updated 11 months ago
- Morphometric similarity in psychosis- data and code☆44Updated 5 years ago
- Code supporting Hansen et al., 2021, Nature Human Behaviour "Mapping gene transcription and neurocognition across human neocortex".☆20Updated 2 years ago
- Brain Surrogate Maps with Autocorrelated Spatial Heterogeneity☆46Updated 9 months ago
- Maps gene samples into surface parcellation☆19Updated 7 years ago
- Subtype and Stage Inference [Young+, Nature Communications 2018]☆13Updated 3 years ago
- ComBat Family of Harmonization Methods☆18Updated 6 months ago
- ☆21Updated last year
- NMF Code for calculating components from Brain imaging data.☆16Updated 2 years ago
- Analysis functions for surface-based analyses, using freesurfer and connectome workbench☆13Updated 11 months ago
- ☆12Updated 2 years ago
- Data and code supporting Hansen et al., 2022, Nature Communications, "Local molecular and global connectomic contributions to cross-disor…☆22Updated 2 years ago
- Fragments FreeSurfer parcellation annotation in N-equal sized parcels☆27Updated 4 years ago
- This toolbox includes MATLAB scripts to perform a "spin test" of anatomical correspondence between cortical surface maps, as presented in…☆52Updated 4 years ago
- Python codes and sample scripts for connectome-spatial smoothing (CSS)☆11Updated last year
- Subdivides the surface-based Desikan-Killiany atlas into equally sized regions. Please cite: Romero-Garcia R, Atienza M, Clemmensen LH, C…☆13Updated 4 years ago
- Load fMRIprep confounds in python☆36Updated 3 years ago
- ☆37Updated 4 months ago
- Project your functional brain signal onto the white matter, and explore the pathways supporting brain functions.☆29Updated 10 months ago
- Code used for Hippocampus Anterior/Posterior gene expression and neuroimaging analyses☆10Updated last year
- A toolbox for working with Allen Human Brain Atlas microarray expression data☆12Updated 3 months ago