MDAnalysis / MDAnalysisWorkshop-Intro0.5DayLinks
Materials for 0.5-day MDAnalysis workshops
☆13Updated 6 months ago
Alternatives and similar repositories for MDAnalysisWorkshop-Intro0.5Day
Users that are interested in MDAnalysisWorkshop-Intro0.5Day are comparing it to the libraries listed below
Sorting:
- ☆65Updated 6 months ago
- ☆13Updated 6 months ago
- Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation te…☆19Updated 3 years ago
- Tutorial to run AMBER umbrella COM restraint code and derive free energy of transfer profile for methanol through DMPC membrane☆40Updated 2 years ago
- Analysis of non-covalent interactions in MD trajectories☆66Updated last year
- An OpenMM plugin that implements the Alchemical Transfer Potential☆40Updated 2 years ago
- A collections of scripts for working molecular dynamics simulations☆45Updated 6 months ago
- ☆35Updated last year
- Computational Chemistry Workflows☆56Updated 3 years ago
- Fully automated high-throughput MD pipeline☆88Updated last week
- ☆44Updated last year
- Python package built on NAMD/OpenMM and OpenMMTools to perform binding free energy calculations using the TIES protocol.☆34Updated 2 years ago
- This pipeline is executing a RE-EDS run for relative free energy calculations. It can be used for example for calculation of hydration fr…☆32Updated 8 months ago
- COBY (Coarse Grained System Builder) can be used to create coarse-grained systems in Martini 3☆43Updated 2 months ago
- Temperature generator for Replica Exchange MD simulations☆29Updated 3 years ago
- A Deep Neural Network to predict small molecule torsion energy profiles with the accuracy of QM☆40Updated 2 years ago
- ☆29Updated 9 months ago
- Free Parametrization for Small Molecules☆50Updated this week
- Tutorials of few enhanced sampling methods along with bash script to run the method in a single shot..☆48Updated 4 years ago
- A Tutorial for quasi Markov State Model(qMSM) developed by Huang Group, Dept of Chemistry at UW-Madison☆19Updated 2 years ago
- Materials for 2023 workshop at CCPBioSim Training Week https://www.ccpbiosim.ac.uk/events/upcoming-events/eventdetail/104/-/training-week☆31Updated 2 years ago
- ☆31Updated 2 weeks ago
- Accurate prediction of protein pKa with representation learning☆46Updated 11 months ago
- Random Acceleration Molecular Dynamics in GROMACS☆43Updated last year
- Full automation of relative protein-ligand binding free energy calculations in GROMACS☆46Updated 4 years ago
- This is a SnakeMake based workflow for ABFE calculations that can be easily scaled in a high-throughput manner via Slurm for example.☆60Updated last month
- User Guide for MDAnalysis☆29Updated this week
- ☆25Updated 2 years ago
- ☆69Updated 2 years ago
- A tutorials suite for BioSimSpace.☆34Updated 3 months ago