AIM-Harvard / TotalSegmentator-to-nnUNet-format-convertView external linksLinks
Convert the TotalSegmentator dataset into the nnUNet format
☆19Aug 1, 2023Updated 2 years ago
Alternatives and similar repositories for TotalSegmentator-to-nnUNet-format-convert
Users that are interested in TotalSegmentator-to-nnUNet-format-convert are comparing it to the libraries listed below
Sorting:
- ☆15Feb 12, 2025Updated last year
- A multilabel lymph node segmentation dataset from contrast CT☆26Jul 29, 2025Updated 6 months ago
- BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Comp…☆59Nov 7, 2025Updated 3 months ago
- 3DSlicer plugin for inpainting lung nodules in 3D chest CT data.☆11Dec 2, 2024Updated last year
- All the code available to reproduce the paper "Deep Learning Surrogate of Computational Fluid Dynamics for Thrombus Formation Risk in the…☆13Nov 7, 2019Updated 6 years ago
- This is the official repository for Fast-nnUNet, a new fast model inference framework based on the nnUNet framework implementation.☆21Nov 3, 2025Updated 3 months ago
- examples of using PyMIC for medical image computing with deep learning☆34Nov 15, 2024Updated last year
- Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterat…☆85Jan 29, 2026Updated 2 weeks ago
- A UNet for the analysis of perfusion CT imaging in the setting of acute ischemic stroke.☆17May 8, 2025Updated 9 months ago
- The Centerline-Cross Entropy Loss for Vessel-Like Structure Segmentation: Better Topology Consistency Without Sacrificing Accuracy. Paper…☆24Oct 7, 2024Updated last year
- Welcome to Nifti2Dicom! Born from countless hours of yelling at screens, this software aims to swap NIfTI for DICOM without inviting any …☆24Sep 25, 2025Updated 4 months ago
- ☆25Jan 26, 2026Updated 3 weeks ago
- Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning☆26Feb 4, 2026Updated last week
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆128Jan 23, 2026Updated 3 weeks ago
- MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit☆102Oct 1, 2025Updated 4 months ago
- Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created t…☆26Jun 19, 2025Updated 7 months ago
- Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation☆33Dec 19, 2025Updated last month
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆32Feb 13, 2024Updated 2 years ago
- Pre-trained Diffusion Models for Plug-and-Play Medical Image Enhancement☆29Oct 3, 2023Updated 2 years ago
- ☆27Oct 30, 2023Updated 2 years ago
- Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]☆40Feb 9, 2023Updated 3 years ago
- Python module for processing dynamic contrast enhanced magnetic resonance imaging (DCE-MRI) data☆32Apr 28, 2022Updated 3 years ago
- Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model☆241Oct 9, 2025Updated 4 months ago
- An integrated framework for DWI Image QC and processing☆13Oct 22, 2025Updated 3 months ago
- ☆12Sep 21, 2023Updated 2 years ago
- [ICLR 2025] Learning General-purpose Biomedical Volume Representations using Randomized Synthesis☆91Dec 25, 2025Updated last month
- MedShapeNet 2.0 | A Large-scale Dataset of 3D Medical Shapes | An updated version of MedShapeNet 1.0☆46Sep 26, 2025Updated 4 months ago
- This repository contains software tools developed/adopted by the Quantitative Imaging and Medical Physics (QIMP) team, Medical University…☆10Aug 2, 2024Updated last year
- COSTA: A Multi-center Multi-vendor TOF-MRA Dataset and A Novel Cerebrovascular Segmentation Network☆42Dec 17, 2025Updated 2 months ago
- AI-CAC is a deep learning model that segments and scores coronary artery calcium (CAC) on routine non-gated, non-contrast chest CT scans.☆19Jan 29, 2026Updated 2 weeks ago
- ☆129Oct 7, 2025Updated 4 months ago
- [IEEE TMI] Tumor synthesis leveraging medical reports.☆48Jan 26, 2026Updated 3 weeks ago
- nii2dcm: NIfTI to DICOM creation with Python☆87May 6, 2025Updated 9 months ago
- Training foundational medical imaging models using multi-task learning.☆46Sep 25, 2025Updated 4 months ago
- Monte Carlo simulation of (4D) cone beam computed tomography☆11Dec 10, 2024Updated last year
- My personal solutions to some textbook problems☆10Feb 12, 2020Updated 6 years ago
- UKRIN Kidney Analysis Toolbox☆12Mar 27, 2025Updated 10 months ago
- The source code of the winning algorithm of the MICCAI Grand Challenge Carotid Artery Vessel Wall Segmentation Challenge☆13Apr 15, 2024Updated last year
- This is the main hub for those interested in design in the OpenMined community☆10Oct 8, 2024Updated last year