Convert the TotalSegmentator dataset into the nnUNet format
☆19Aug 1, 2023Updated 2 years ago
Alternatives and similar repositories for TotalSegmentator-to-nnUNet-format-convert
Users that are interested in TotalSegmentator-to-nnUNet-format-convert are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Feb 12, 2025Updated last year
- A multilabel lymph node segmentation dataset from contrast CT☆28Jul 29, 2025Updated 10 months ago
- This repository provides a 3D implementation of DINOv2 for self-supervised pretraining on volumetric (3D) medical images using Lightly, M…☆54Apr 24, 2026Updated last month
- BOA is a segmentation tool of CT scans by the SHIP-AI group (https://ship-ai.ikim.nrw/). Combining the TotalSegmentator and the Body Comp…☆75Updated this week
- 3DSlicer plugin for inpainting lung nodules in 3D chest CT data.☆11Dec 2, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- All the code available to reproduce the paper "Deep Learning Surrogate of Computational Fluid Dynamics for Thrombus Formation Risk in the…☆13Nov 7, 2019Updated 6 years ago
- examples of using PyMIC for medical image computing with deep learning☆33Feb 23, 2026Updated 3 months ago
- Welcome to Nifti2Dicom! Born from countless hours of yelling at screens, this software aims to swap NIfTI for DICOM without inviting any …☆26Mar 5, 2026Updated 3 months ago
- Code for training and inference of a 3D CNN for whole-heart segmentation in CCTA☆13Mar 30, 2022Updated 4 years ago
- Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterat…☆102Jun 11, 2026Updated last week
- Pre-trained Diffusion Models for Plug-and-Play Medical Image Enhancement☆30Oct 3, 2023Updated 2 years ago
- The Centerline-Cross Entropy Loss for Vessel-Like Structure Segmentation: Better Topology Consistency Without Sacrificing Accuracy. Paper…☆29Oct 7, 2024Updated last year
- Public release of Track-to-Learn: A general framework for tractography with deep reinforcement learning☆26Feb 4, 2026Updated 4 months ago
- Computational Environment for Radiological Research☆30Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆31Updated this week
- MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit☆103Feb 24, 2026Updated 3 months ago
- 1-day R workshop for experienced users. First session covers script writing, file names and overall project structures. The second sessio…☆13Jan 25, 2019Updated 7 years ago
- RefMan - A Simple python-based reference manager☆18Nov 2, 2023Updated 2 years ago
- Jupyter Notebook vizualizing 10+ years of my body composition data☆12Jun 27, 2020Updated 5 years ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆34Feb 13, 2024Updated 2 years ago
- Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor functionality. Created t…☆26May 20, 2026Updated 3 weeks ago
- dMRI based fiber tracking using parallel transport tractography☆30May 18, 2026Updated last month
- [IEEE TMI] Tumor synthesis leveraging medical reports.☆49Jan 26, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis☆62Nov 22, 2024Updated last year
- A 3D Slicer extension for efficient segmentation with nnInteractive.☆143May 13, 2026Updated last month
- A UNet for the analysis of perfusion CT imaging in the setting of acute ischemic stroke.☆17May 8, 2025Updated last year
- A flexible and modular learning platform for medical images☆27May 11, 2026Updated last month
- A thesis template compliant with King's College London and UCL rules☆19Dec 14, 2025Updated 6 months ago
- A repository containing deep learning models and evaluation methods for enhancing medical image segmentation in Computed Tomography (CT) …☆21Jan 20, 2024Updated 2 years ago
- Stores the MHub models dockerfiles and scripts.☆11Apr 30, 2026Updated last month
- Dockerfile for building REDCap a secure web application for building and managing online surveys and databases. http://www.project-redca…☆17Jan 15, 2016Updated 10 years ago
- S-EFOV: Thoracic CT-based Body Composition Analysis with Semantically Extended FOV☆15Feb 29, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- [MIA'22] Automatic Grading Assessments for Knee MRI Cartilage Defects via Self-ensembling Semi-supervised Learning with Dual-Consistency☆23Jul 27, 2022Updated 3 years ago
- Implementation of the OPPGC algorithm☆13Feb 6, 2023Updated 3 years ago
- 【IEEE TPAMI 2025】Uncertainty-aware Medical Diagnostic Phrase Identification and Grounding☆34Mar 17, 2026Updated 3 months ago
- This repository is dedicated to my YouTube video where I add GitHub login through Laravel Socialite☆10Jan 18, 2023Updated 3 years ago
- [ICLR 2025] Learning General-purpose Biomedical Volume Representations using Randomized Synthesis☆94Jun 9, 2026Updated last week
- Run PHP Code Sniffer tests in Github Actions.☆11Feb 10, 2026Updated 4 months ago
- Tool to multiplex different tracer PET data from the same patient.☆21May 28, 2026Updated 3 weeks ago