Alternatives and similar repositories for nnunetdocker:

Users that are interested in nnunetdocker are comparing it to the libraries listed below

• Sikerdebaard / dcmrtstruct2nii
  DICOM RT-Struct to mask
  ☆101Updated last year
• Abe404 / mask_to_dicom_rtstruct
  Convert numpy mask to dicom rtstruct
  ☆12Updated 2 years ago
• leohsuofnthu / Pytorch-IterativeFCN
  Pytorch implementation of the paper Iterative fully convolutional neural networks for automatic vertebra segmentation accepted in MIDL201…
  ☆63Updated last year
• brianmanderson / Dicom_RT_and_Images_to_Mask
  Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and Simpl…
  ☆98Updated 4 months ago
• pyplati / platipy
  Processing Library and Analysis Toolkit for Medical Imaging in Python
  ☆129Updated last week
• GSTT-CSC / TotalSegmentator-AIDE
  TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.
  ☆25Updated last year
• rcuocolo / PROSTATEx_masks
  Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.
  ☆82Updated 2 years ago
• mazurowski-lab / SegmentAnyBone
  SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI
  ☆81Updated 4 months ago
• Slicer / SlicerLungCTAnalyzer
  This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.
  ☆77Updated 6 months ago
• simonsf / RTP-Net
  ☆33Updated last year
• ubern-mia / pyradise
  PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion
  ☆49Updated 4 months ago
• razorx89 / pydicom-seg
  Python package for DICOM-SEG medical segmentation file reading and writing
  ☆85Updated last year
• MIC-DKFZ / BodyPartRegression
  ☆66Updated last year
• fepegar / SlicerPyTorch
  This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.
  ☆34Updated last year
• SimpleITK / TUTORIAL
  ☆110Updated 2 months ago
• bhklab / med-imagetools
  Transparent and reproducible medical image processing pipelines in Python.
  ☆46Updated this week
• MStarmans91 / WORC
  Workflow for Optimal Radiomics Classification
  ☆74Updated last month
• davidiommi / Pytorch-Unet3D-single_channel
  3D-Unet: patched based Pytorch implementation for medical images segmentation
  ☆63Updated 3 years ago
• andreped / livermask
  💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model
  ☆66Updated 6 months ago
• lassoan / SlicerSegmentationRecipes
  Recipes for common medical image segmentation tasks using 3D Slicer
  ☆55Updated 2 years ago
• shchojj / nfti2dcm
  nifti-formatted image/labels are converted to dicom
  ☆11Updated last month
• bbrister / ctOrganSegmentation
  Morphological organ segmentation for CT scans
  ☆20Updated 4 years ago
• IML-DKFZ / nnunet-workshop
  ☆45Updated last year
• ljpadam / maximum_intensity_projection
  Maximum intensity projection for medical image
  ☆21Updated 7 years ago
• fepegar / vesseg
  Brain vessel segmentation using 3D convolutional neural networks
  ☆43Updated 2 years ago
• aqqush / CT_BET
  Robust Brain Extraction Tool for CT Head Images
  ☆46Updated 4 years ago
• antonioguj / bronchinet
  Airway segmentation from chest CTs using deep Convolutional Neural Networks
  ☆66Updated 10 months ago
• UMEssen / SALT
  Softmax for Arbitrary Label Trees (SALT) is a framework for training segmentation networks using conditional probabilities to model hiera…
  ☆78Updated 6 months ago
• pwoznicki / AutoRadiomics
  The easiest tool for experimenting with radiomics features.
  ☆40Updated 11 months ago
• connectomicslab / Aneurysm_Detection
  This repository contains the code used for the paper "Towards automated brain aneurysm detection in TOF-MRA: open data, weak labels, and …
  ☆31Updated 2 years ago