wanderine / nnunetdockerLinks
☆14Updated 5 years ago
Alternatives and similar repositories for nnunetdocker
Users that are interested in nnunetdocker are comparing it to the libraries listed below
Sorting:
- Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and Simpl…☆101Updated 8 months ago
- Python package for DICOM-SEG medical segmentation file reading and writing☆86Updated last year
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆132Updated 2 months ago
- Pytorch implementation of the paper Iterative fully convolutional neural networks for automatic vertebra segmentation accepted in MIDL201…☆65Updated 2 years ago
- DICOM RT-Struct to mask☆101Updated last year
- Generative Adversarial Networks for Computationally Efficient Radiotherapy☆51Updated 2 years ago
- ☆47Updated last year
- Computed tomography to body composition (Comp2Comp).☆91Updated last month
- 💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model☆68Updated 10 months ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆84Updated 3 years ago
- ☆73Updated last month
- Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.☆122Updated 3 years ago
- Recipes for common medical image segmentation tasks using 3D Slicer☆58Updated 3 years ago
- Transparent and reproducible medical image processing pipelines in Python.☆50Updated last week
- A project to provide custom sorting and renaming of dicom files☆78Updated 3 months ago
- PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion☆51Updated 3 weeks ago
- A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.☆237Updated 3 weeks ago
- Extension for 3D Slicer for running MONAI Auto3DSeg models☆93Updated last month
- End-to-end Python CT volume preprocessing pipeline to convert raw DICOMs into clean 3D numpy arrays for ML. From paper Draelos et al. "Ma…☆73Updated 4 years ago
- Maximum intensity projection for medical image☆22Updated 7 years ago
- Implementation of the DeepVesselNet deep learning network☆151Updated 2 years ago
- Convert numpy mask to dicom rtstruct☆12Updated 2 years ago
- ☆112Updated 6 months ago
- Develop plan optimization models for knowledge-based planning in radiotherapy☆20Updated 7 months ago
- This extension contains only a module with some tools to install PyTorch inside Slicer, using the best possible version.☆35Updated 2 months ago
- Robust Brain Extraction Tool for CT Head Images☆46Updated 4 years ago
- Develop dose prediction models for knowledge-based planning in radiotherapy☆119Updated 8 months ago
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆29Updated last year
- This is a 3D Slicer extension for segmentation and spatial reconstruction of infiltrated, collapsed, and emphysematous areas in lung CT.☆83Updated 10 months ago
- Data, notebooks, and articles associated with the RSNA AI Deep Learning Lab at RSNA 2021☆81Updated 3 years ago