kkiser1 / Autosegmentation-Spatial-Similarity-Metrics
Code for calculating the added path length, false negative path length, and false negative volume..
☆10Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for Autosegmentation-Spatial-Similarity-Metrics
- DICOM RT-Struct to mask☆93Updated 8 months ago
- ☆135Updated 2 months ago
- Lesion and prostate masks for the PROSTATEx training dataset, after a lesion-by-lesion quality check.☆77Updated 2 years ago
- Neural Pre Processing is an end-to-end weakly supervised learning approach for converting raw head MRI images to intensity-normalized, sk…☆26Updated 9 months ago
- Config-based framework for organized and reproducible deep learning. MONAI Bundle + PyTorch Lightning.☆22Updated last week
- Hierarchical probabilistic 3D U-Net, with attention mechanisms (—𝘈𝘵𝘵𝘦𝘯𝘵𝘪𝘰𝘯 𝘜-𝘕𝘦𝘵, 𝘚𝘌𝘙𝘦𝘴𝘕𝘦𝘵) and a nested decoder str…☆39Updated 2 years ago
- A grid sampler for larger-than-memory N-dimensional images☆24Updated 4 months ago
- ☆64Updated 7 months ago
- A package to compute medical segmentation metrics.☆123Updated 4 months ago
- ☆75Updated last year
- Airway segmentation from chest CTs using deep Convolutional Neural Networks☆62Updated 5 months ago
- 3D-Unet: patched based Pytorch implementation for medical images segmentation☆62Updated 3 years ago
- The official repository of the 2023 Kidney Tumor Segmentation Challenge (KiTS23)☆81Updated 8 months ago
- ☆71Updated 3 months ago
- Docker for running stroke lesion core segmentation☆29Updated 3 years ago
- Tools to help with the conversion of DICOM images, RT Structures, and dose to useful Python objects. Essentially DICOM to NumPy and Simpl…☆91Updated last month
- ISBI2022: An Improved Deep Learning Framework for MR-to-CT Image Synthesis with a New Hybrid Objective Function.☆11Updated 2 years ago
- new and more efficient version for 3D discrete deformable registration, reaching the highest accuracy in several benchmarks☆102Updated last year
- Code and evaluation repository for the paper☆83Updated last week
- autoPET TCIA pipeline☆41Updated 2 years ago
- Annotations for the PI-CAI Challenge: Public Training and Development Dataset☆49Updated 2 months ago
- This repository employs a deep-learning method for the automated segmentation of total metabolic tumor volume (TMTV) in whole-body [18]F-…☆15Updated 2 months ago
- A python (Pytorch) implementation of Beam Dose Decomposition for Dose Prediction [MICCAI 2022]☆18Updated 10 months ago
- Hand-crafted radiomics and deep learning-based radiomcis features extraction.☆78Updated 2 years ago
- ☆15Updated 6 months ago
- Transparent and reproducible medical image processing pipelines in Python.☆36Updated this week
- ☆31Updated last year
- TotalSegmentator packaged as an AIDE Application, based on the MONAI Application Package (MAP) standard.☆24Updated 9 months ago
- Processing Library and Analysis Toolkit for Medical Imaging in Python☆117Updated this week
- Workflow for Optimal Radiomics Classification☆69Updated 4 months ago