Alternatives and similar repositories for cryoEM-notebooks

Users that are interested in cryoEM-notebooks are comparing it to the libraries listed below

• Guillawme / cryoEM-scripts
  Utilities to help cryoEM data analysis
  ☆20Updated 3 years ago
• ml-struct-bio / cryofire
  Amortized inference for ab initio heterogeneous cryo-EM reconstruction
  ☆37Updated 2 years ago
• turonova / cryoCAT
  Contextual Analysis Tools for cryoET and subtomogram averaging
  ☆28Updated 2 weeks ago
• wan-lab-vanderbilt / TOMOMAN
  A set of MATLAB wrapper scripts to help with pre-processing of tomography data.
  ☆19Updated 9 months ago
• SBC-Utrecht / PyTom
  PyTom software for cryo-tomogram processing
  ☆42Updated last month
• bpowell122 / tomodrgn
  Neural networks to analyze structural heterogeneity in cryo-electron sub-tomograms
  ☆27Updated 4 months ago
• zhonge / cryodrgn_empiar
  ☆29Updated 4 years ago
• alncat / opusDSD
  deep structural disentanglement
  ☆37Updated last month
• bionanopatterning / Ais
  ☆17Updated last week
• cianfrocco-lab / Automatic-cryoEM-preprocessing
  Tools for user-free preprocessing of cryo-EM datasets
  ☆26Updated 2 years ago
• phonchi / Computational-CryoET
  A curated list of awesome computational cryo-ET methods.
  ☆59Updated 7 months ago
• phonchi / Computational-CryoEM
  A curated list of awesome computational cryo-EM methods.
  ☆124Updated 3 months ago
• ma-gilles / recovar
  ☆30Updated this week
• dkimanius / sbackprop
  Sparse Fourier Backpropagation in Cryo-EM Reconstruction
  ☆11Updated last year
• ml-struct-bio / drgnai
  ☆31Updated 7 months ago
• teamtomo / starfile
  STAR file I/O in Python
  ☆51Updated 2 months ago
• azazellochg / 3DEM-conventions
  Conventions for 3DEM software packages
  ☆19Updated 3 years ago
• geoffwoollard / learn_cryoem_math
  ☆123Updated last month
• evanseitz / ManifoldEM_Python
  ManifoldEM Python suite
  ☆16Updated 6 months ago
• dtegunov / warp
  ☆16Updated 8 years ago
• 3dem / DynaMight
  Tool for reconstruction and analysis of continuous heterogeneity of a cryo-EM dataset
  ☆27Updated 5 months ago
• czimaginginstitute / AreTomo3
  Live processing and real time reconstruction of cryo
  ☆27Updated last week
• EICN-UCLA / cryoID
  cryoID identifies the protein(s) in unknown near-atomic resolution cryoEM density maps from a pool of candidate proteins.
  ☆13Updated 5 years ago
• dzyla / MRC_napari_viewer
  Cryo-EM data viewer in napari
  ☆14Updated 4 years ago
• MPI-Dortmund / cryolo
  cryolo documentation
  ☆10Updated last year
• turonova / novaCTF
  3D-CTF correction for cryo-electron tomography
  ☆26Updated 6 years ago
• thomasfrosio / emClarity-tutorial
  ☆12Updated 2 years ago
• bpowell122 / cryoSRPNT
  Rapidly simulate realistic cryo-EM particles
  ☆15Updated 2 years ago
• ZauggGroup / DeePiCt
  Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (co…
  ☆36Updated last year
• arunabh98 / EPFL-CryoEM
  Implementation of a Bayesian approach to cryo-EM structure determination
  ☆9Updated 6 years ago