singa-bio / singa
SiNGA (Simulation of Natural Systems using Graph Automata) is an open-source library containing tools especially for structural bioinformatics and systems biology.
β9Updated 2 years ago
Alternatives and similar repositories for singa:
Users that are interested in singa are comparing it to the libraries listed below
- π Fit3D - An application for template-based detection of small structural motifs in protein structures and macromolecular structure dataβ¦β11Updated 6 years ago
- A Java library for handling text and BinaryCIF files.β11Updated last month
- Protein structure descriptors and alignment based on 3D Zernike moments.β34Updated 11 months ago
- SMILES Depiction Generatorβ55Updated last week
- Molecular Query Languageβ30Updated 6 months ago
- Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic bβ¦β27Updated this week
- β22Updated last year
- A simple Git cheat sheetβ7Updated 4 years ago
- β28Updated 8 months ago
- Python-based Informatics Kit for Analysing Chemical Unitsβ68Updated 7 months ago
- SMSD is a Java based software library for finding Maximum Common Subgraph (MCS)/ Substructure between small molecules.β43Updated 5 months ago
- An open-source library for the analysis of protein interactions.β29Updated 3 years ago
- PyDock Tutorialβ30Updated 6 years ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequenceβ50Updated last month
- Direct-to-SVG small molecule drawer.β24Updated 5 months ago
- β40Updated last month
- To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.β23Updated last year
- BinaryCIF is a data format for storing text based CIF files using a more efficient binary encoding.β23Updated 3 months ago
- β23Updated 3 years ago
- Create molecular hashesβ27Updated 5 years ago
- Python interface for the RCSB search API.β20Updated 9 months ago
- Galaxy Tools for Computational Chemistryβ14Updated last month
- ATTRACT program suite for macromolecular docking (protein-protein, protein-nucleic acid, protein-peptide)β16Updated 11 months ago
- Open Source Protein REdesign for You v3β48Updated last month
- CADEE: Computer-Aided Directed Evolution of Enzymesβ17Updated last year
- The Swiss Army knife for carbohydrate structure validation, refinement and analysisβ26Updated this week
- β15Updated 2 years ago
- A Python platform for Structural Bioinformaticsβ56Updated 11 months ago
- Ligand binding site prediction and virtual screeningβ12Updated 6 years ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)β40Updated last week