ᴘᴜʟꜱᴇᴡɪʀᴇ ᴀɴᴅ ᴇᴀꜱʏᴇꜰꜰᴇᴄᴛꜱ ᴘʀᴇꜱᴇᴛꜱ ʜᴇʀᴇ ꜰᴏʀ ʟɪɴᴜx
☆20Aug 29, 2026Updated 2 months ago
Alternatives and similar repositories for projectpulsewire
Users that are interested in projectpulsewire are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14May 18, 2025Updated last year
- Multi platform molecular dynamics simulator for coarse-grained MD simulation on GPU.☆15Oct 2, 2026Updated last month
- JAX translation of BoltzGen☆12Nov 11, 2025Updated 11 months ago
- Documentation for Rosetta Applications. The source for the Rosetta documentation wiki.☆11Oct 12, 2026Updated 3 weeks ago
- Python script to run Vina-GPU against the AlphaFold proteome of any species☆10Apr 23, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Open Source, Prepare a molecular dynamic simulation from scratch without installing local VMD, use LigParGen for topology, it is one of t…☆14Jul 3, 2023Updated 3 years ago
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated 2 years ago
- Rank binders by structure modeling☆11Apr 10, 2026Updated 6 months ago
- AdaptiveFlow for Ligand Preparation (AFLP)☆10May 27, 2026Updated 5 months ago
- CAPSIF2 and PiCAP☆15May 29, 2026Updated 5 months ago
- 2D Protein-Ligand Interaction Generator with PLIP output☆10Sep 7, 2025Updated last year
- Cyclic peptide binder design using a fragment docking and assembling strategy☆12May 20, 2025Updated last year
- Introductions to AlphaFold, RoseTTAFold, and OmegaFold covered in the course CHEM5570-100 at the University of Oklahoma☆12Dec 8, 2023Updated 2 years ago
- ☆11Jun 16, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆14Mar 15, 2025Updated last year
- Repository of computational biochemistry protocols for the Amber package☆12Oct 4, 2024Updated 2 years ago
- Tool repository for CAR-PNN☆14Oct 7, 2026Updated 3 weeks ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Aug 29, 2026Updated 2 months ago
- ☆13Mar 4, 2026Updated 7 months ago
- AF2chi implementation code for localColabFold☆10Oct 8, 2026Updated 3 weeks ago
- prepare AMBER files for MD simulations from a pdb file☆13Jul 6, 2025Updated last year
- Code described in Harvey et al. 2026 (DOI: https://doi.org/10.1038/s41467-026-72093-5).☆11Oct 14, 2026Updated 2 weeks ago
- A simple tool for creating and running MD simulations, using Jupyter and OpenMM☆12Aug 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- High-performance SASA (Solvent Accessible Surface Area) calculation in Zig with Python bindings☆13Updated this week
- Code of "Instruction Multi-Constraint Molecular Generation Using a Teacher-Student Large Language Model"☆14Jul 8, 2025Updated last year
- ☆15Sep 27, 2026Updated last month
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse☆12Feb 22, 2024Updated 2 years ago
- Python module for the calculation of shape complementarity☆13Apr 4, 2026Updated 6 months ago
- ☆15Apr 17, 2025Updated last year
- Source code for The Protein Design Archive web application.☆10Updated this week
- ☆13Jun 7, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code accompanying the paper: Amino Acid Composition drives Peptide Aggregation: Predicting Aggregation for Improved Synthesis☆14Feb 18, 2025Updated last year
- ☆14Oct 30, 2024Updated 2 years ago
- ☆11Aug 29, 2026Updated 2 months ago
- ☆12May 27, 2024Updated 2 years ago
- SableBind is an open-source framework dedicated to predicting protein-ligand binding affinity☆13Feb 6, 2025Updated last year
- Official implementation of "Rigidity-Aware Geometric Pretraining for Protein Design and Conformational Ensembles" (ICLR 2026)☆20Mar 16, 2026Updated 7 months ago
- Deep learning + physical modeling for 3D protein metal ion binding prediction☆14Feb 24, 2025Updated last year