Alternatives and similar repositories for pygorpho

Users that are interested in pygorpho are comparing it to the libraries listed below

• seung-lab / dijkstra3d
  Dijkstra's Shortest Path for 6, 18, and 26-Connected 3D (Volumetric) Image Volumes
  ☆83Updated 3 months ago
• mwagner9 / BEGPUThinning
  ☆32Updated 5 years ago
• SCIInstitute / ShapeWorks
  ShapeWorks
  ☆126Updated this week
• seung-lab / euclidean-distance-transform-3d
  Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
  ☆261Updated 2 months ago
• andreasmang / claire
  Constrained Large Deformation Diffeomorphic Image Registration (CLAIRE)
  ☆50Updated 11 months ago
• seung-lab / kimimaro
  Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
  ☆188Updated 3 weeks ago
• SlicerMorph / SlicerMorph
  Extension to import microCT data and conduct 3D morphometrics in Slicer
  ☆115Updated last month
• lassoan / slicerio
  Utilities for reading and writing files created by 3D Slicer
  ☆42Updated last year
• seung-lab / zmesh
  Marching Cubes & Mesh Simplification on multi-label 3D images.
  ☆72Updated this week
• seung-lab / fastmorph
  Multilabel and Grey 3D morphological image processing functions. Dilate, Erode, Opening, Closing, Hole Filling.
  ☆19Updated 3 months ago
• simeks / deform
  Efficient dense deformable image registration
  ☆29Updated 2 years ago
• Kitware / SlicerSALT
  An open-source, free comprehensive software that will allow biomedical scientists to precisely locate shape changes in their imaging stud…
  ☆67Updated last month
• berendkleinhaneveld / Registrationshop
  Interactive registration tool for 3D medical datasets
  ☆33Updated last year
• SuperElastix / SuperElastix
  Official SuperElastix repository
  ☆88Updated 6 years ago
• lassoan / SlicerSegmentMesher
  Create volumetric mesh from segmentation using Cleaver2 or TetGen
  ☆33Updated last year
• Skielex / slgbuilder
  A Python package for building and cutting sparse layered s-t graphs.
  ☆13Updated 2 years ago
• SteffenCzolbe / pyLDDMM
  Python Implementation of the LDDMM algorithm
  ☆56Updated 5 years ago
• InsightSoftwareConsortium / ITKPythonPackage
  A setup script to generate ITK Python Wheels
  ☆63Updated 3 weeks ago
• sebastianandress / Slicer-SurfaceWrapSolidify
  3D Slicer extension which contains a Segment Editor Effect that solidifies and extracts the surface of a segmentation
  ☆36Updated last year
• KitwareMedical / ITKContourInterpolation
  An implementation of morphological contour interpolation
  ☆34Updated 2 months ago
• antonfrancois / Demeter_metamorphosis
  Open library for LDDMM and Metamorphosis in PyTorch
  ☆24Updated last month
• almarklein / pyelastix
  Thin wrapper around elastix - a toolbox for rigid and nonrigid registration of images
  ☆109Updated 5 years ago
• brianlee324 / torch-lddmm
  GPU and CPU implementation of LDDMM image registration
  ☆63Updated 2 weeks ago
• cvlab-epfl / voxel2mesh
  Voxel2Mesh: 3D Mesh Model Generation from Volumetric Data
  ☆182Updated 2 years ago
• araex / mitk-gem
  MITK - Generate Models (MITK-GEM) is a free open-source software pipeline to generate finite element models from image data.
  ☆42Updated 5 years ago
• yzhong52 / ThinVesselSegmentation
  C++ implementation of vesselness measure (or vesselness filter). Both CPU and GPU version are available.
  ☆43Updated 8 years ago
• aAbdz / CylShapeDecomposition
  Cylindrical Shape Decomposition
  ☆16Updated 3 years ago
• seung-lab / fill_voids
  Fill holes in binary 2D & 3D images fast.
  ☆29Updated 5 months ago
• tix209 / SOAX
  2D/3D biopolymer network extraction and quantification.
  ☆16Updated 5 months ago
• ITISFoundation / osparc-iseg
  The Medical Image Segmentation Tool Set (iSEG) is a fully integrated segmentation (including pre- and postprocessing) toolbox for the eff…
  ☆53Updated 2 years ago