Alternatives and similar repositories for openslide-bin

Users that are interested in openslide-bin are comparing it to the libraries listed below

• openslide / openslide
  C library for reading virtual slide images
  ☆440Updated last week
• Pathomation / pma_python
  Python wrapper library for PMA.start, a universal viewier for whole slide imaging and microscopy
  ☆31Updated 7 months ago
• Bayer-Group / paquo
  PAthological QUpath Obsession - QuPath and Python conversations
  ☆118Updated 7 months ago
• zeiss-microscopy / libCZI
  Open Source Cross-Platform C++ library to read CZI image files
  ☆72Updated 2 years ago
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆140Updated last month
• Booritas / slideio
  ☆70Updated last week
• openslide / openslide-python
  Python bindings to OpenSlide
  ☆403Updated 2 weeks ago
• bgilbert / anonymize-slide
  Delete the label from a whole-slide image
  ☆65Updated 4 years ago
• computationalpathologygroup / WSICS
  WSICS
  ☆30Updated 6 years ago
• GoogleCloudPlatform / qupath-chcapi-extension
  Extension to QuPath application adding support for reading from Google Cloud Healthcare API.
  ☆23Updated 3 years ago
• DigitalSlideArchive / digital_slide_archive
  The official deployment of the Digital Slide Archive and HistomicsTK.
  ☆124Updated last week
• Bayer-Group / tiffslide
  TiffSlide - cloud native openslide-python replacement based on tifffile
  ☆103Updated last month
• ome / openmicroscopy
  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological …
  ☆211Updated 3 weeks ago
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆54Updated 4 years ago
• DigitalSlideArchive / DSA-WSI-DeID
  A workflow for redacting PHI from whole slide images (WSI) based on the Digital Slide Archive.
  ☆17Updated this week
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆94Updated last month
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆87Updated last year
• Vaa3D / v3d_external
  www.vaa3d.org : download the latest Binary version here https://github.com/Vaa3D/release/releases/tag/v3.200
  ☆42Updated last month
• pearcetm / svs-deidentifier
  Strip potentially identifying label and macro images from Aperio SVS whole slide image files
  ☆33Updated last year
• MarkZaidi / QuASI
  List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images
  ☆25Updated 2 years ago
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆113Updated 4 months ago
• niaid / sitk-ibex
  Aligning images acquired with the IBEX microscopy imaging technique
  ☆17Updated last week
• darwinjob / pyramidio-bioformats
  Image pyramid reader and writer enhanced with bio-formats library reader
  ☆13Updated last year
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• ome / bioformats
  Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy E…
  ☆399Updated 2 weeks ago
• DigitalSlideArchive / HistomicsTK
  A Python toolkit for pathology image analysis algorithms.
  ☆432Updated this week
• AICAN-Research / FAST-Pathology
  ⚡ Open-source software for deep learning-based digital pathology
  ☆133Updated last year
• CellProfiler / CellProfiler-Analyst
  Open-source software for exploring and analyzing large, high-dimensional image-derived data.
  ☆157Updated this week
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆178Updated this week
• cytomine / Cytomine-bootstrap
  Cytomine Community Edition Legacy
  ☆35Updated 2 years ago