mdpoleto / tupaLinks
TUPÃ: Electric field analyses for molecular simulations
☆21Updated 2 months ago
Alternatives and similar repositories for tupa
Users that are interested in tupa are comparing it to the libraries listed below
Sorting:
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 3 years ago
- Enhanced sampling methods for molecular dynamics simulations☆37Updated 2 years ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆70Updated last week
- ☆65Updated 2 weeks ago
- A Python toolkit for the analyis of lipid membrane simulations☆31Updated 2 weeks ago
- A Python module for carrying out GCMC insertions and deletions of water molecules in OpenMM.☆72Updated 2 years ago
- Pyssian is an object oriented library for parsing Gaussian logfiles and input files which aims to facilitate the everyday scripting of co…☆19Updated 2 weeks ago
- Physical validation of molecular simulations☆56Updated last month
- Generate coarse-grained molecular dynamics models from atomistic trajectories.☆64Updated 2 years ago
- A Package for Parametrization of Molecular Mechanics Force Fields☆32Updated 2 years ago
- MDAnalysis wrapper around Packmol☆33Updated 2 years ago
- Density based object completion over PBC.☆30Updated 8 months ago
- ☆37Updated 11 months ago
- OpenMM plugin to interface with PLUMED☆68Updated 5 months ago
- A comprehensive tool for analyzing liquid solvation structure.☆53Updated 2 weeks ago
- MLP training for molecular systems☆49Updated this week
- A python class for building a ZMatrix from a RDKit molecule. We can also do coordinate transformations between ZMatrix and Cartesian spac…☆15Updated 2 years ago
- Automatic MARTINI parametrization of small organic molecules☆68Updated 2 months ago
- An efficient, multithreaded weighted histogram analysis (WHAM) implementation for the post-processing of umbrella MD simulations.☆27Updated last year
- Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)☆32Updated last year
- Robust Equilibration Detection☆23Updated 3 months ago
- Automatic Mutual Information Noise Omission☆15Updated 10 months ago
- OpenMM plugin for simulating electrochemical systems☆21Updated 10 months ago
- A fast solver for large scale MBAR/UWHAM equations☆39Updated 11 months ago
- Python version of the modified Seminario method code☆16Updated 4 years ago
- A package for all physics based/related models☆53Updated 10 months ago
- ☆11Updated 5 months ago
- RESP with inter- and intra-molecular constraints in Psi4.☆32Updated 2 years ago
- Automated calculation of cavity in molecular cages☆21Updated 4 months ago
- Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-…☆45Updated 11 months ago