JamesClough / topograd
Topological Priors for Image segmentation
☆39Updated 5 years ago
Alternatives and similar repositories for topograd:
Users that are interested in topograd are comparing it to the libraries listed below
- DMT codes for the ICLR 2021 paper: Topology-Aware Segmentation Using Discrete Morse Theory☆45Updated last year
- An implementation of Denoising Variational AutoEncoder with Topological loss☆31Updated 4 years ago
- awesome-topology-driven-deep-image-analysis☆23Updated 2 months ago
- Code and dataset for the MICCAI 2020 paper: Automated Intracranial Artery Labeling using a Graph Neural Network and Hierarchical Refineme…☆29Updated 2 years ago
- pyTorch implementation of clDice☆28Updated 5 years ago
- This repository contains the implementation for our work "Learning Topological Interactions for Multi-Class Medical Image Segmentation", …☆77Updated last year
- MvMM-RegNet: A new image registration framework based on multivariate mixture model and neural network estimation (MICCAI 2020)☆30Updated 8 months ago
- Source code for the paper "Shape-Aware Complementary-Task Learning for Multi-Organ Segmentation" as described in https://arxiv.org/abs/19…☆32Updated last year
- Another implementation of topological loss☆37Updated 3 years ago
- ☆50Updated 7 months ago
- [ICCV 2021] Generative Adversarial Registration for Improved Conditional Deformable Templates☆50Updated 2 years ago
- demo of a vae model for pancreas segmentation.☆29Updated 5 years ago
- [IEEE-TMI'23] TaG-Net: Topology-aware Graph Network for Centerline-based Vessel Labeling☆38Updated last year
- The labels for the open-source dataset used in the paper "Topology-Preserving Automatic Labeling of Coronary Arteries via Anatomy-aware C…☆4Updated 5 months ago
- IEEE-TMI 2021: code for 'Graph-based Region and Boundary Aggregation for Biomedical Image Segmentation'☆28Updated 2 years ago
- Structure-Aware Image Segmentation with Homotopy Warping☆11Updated last year
- [MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation☆39Updated last year
- Joint Atlas Building and Diffeomorphic Registration Learning with Pairwise Alignment☆16Updated 2 years ago
- Topological losses for spatially coherent CNN-based (multi-class) image segmentation in 2D and 3D☆23Updated 2 years ago
- ☆22Updated 2 years ago
- Code for MICCAI 2023 paper: Robust Segmentation via Topology Violation Detection and Feature Synthesis☆20Updated last year
- Persistent homology calculation for 1D (scalar time series), 2D (image), and 3D (voxel) arrays☆51Updated 2 months ago
- A foundation model for universal 3D blood vessel segmentation.☆30Updated last month
- Lung250M-4B: A Combined 3D Dataset for CT- and Point Cloud-Based Intra-Patient Lung Registration☆34Updated last year
- [MedIA‘25] Efficient anatomical labeling of pulmonary tree structures via deep point-graph representation-based implicit fields☆25Updated 3 months ago
- Evaluation code of CHAOS challenge in MATLAB, Python and Julia languages.☆58Updated 5 years ago
- Code for our MIDL 2021 submission☆16Updated 3 years ago
- ☆26Updated last year
- ☆24Updated last year
- SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"☆39Updated last year