rinikerlab / DASH-treeLinks
Partial Charge assignment for Molecular Dynamics
☆23Updated last month
Alternatives and similar repositories for DASH-tree
Users that are interested in DASH-tree are comparing it to the libraries listed below
Sorting:
- Equivariant GNN for the prediction of atomic multipoles up to quadrupoles.☆30Updated 3 years ago
- OpenFF NAGL☆19Updated this week
- fast functionalisation of molecules☆37Updated 4 years ago
- Transferable Double Exponential non-bonded potential for condensed phase simulations of small molecules☆25Updated 4 months ago
- Package for consistent reporting of relative free energy results☆41Updated last week
- a high-throughput alchemical free energy execution system for use with HPC, cloud, bare metal, and Folding@Home☆32Updated this week
- Scripts, inputs and the results generated as part of the training the Sage line of OpenFF force fields.☆21Updated 6 months ago
- Automated tools for the generation of bespoke SMIRNOFF format parameters for individual molecules.☆71Updated last week
- Conformer-Rotamer Ensemble Sampling Tool based on the xtb Semiempirical Extended Tight-Binding Program Package☆34Updated last month
- An automated framework for generating optimized partial charges for molecules☆39Updated last week
- Recipes and protocols for molecular free energy calculations using the openmmtools/perses and Open Free Energy toolkits☆15Updated last week
- A Python library for constructing polymer topologies and coordinates☆18Updated 3 months ago
- Standalone charge assignment from Espaloma framework.☆46Updated 3 months ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆26Updated last year
- Enhanced sampling methods for molecular dynamics simulations☆41Updated 3 years ago
- Automated calculation of cavity in molecular cages☆23Updated last month
- Differentiably evaluate energies using SMIRNOFF force fields☆18Updated last year
- Gromacs Implementation of OPLS-AAM Force field☆14Updated 7 years ago
- OpenMM scripts for polarisable molecular dynamics with the AMOEBA force field☆27Updated 5 years ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆24Updated 4 years ago
- A physical property evaluation toolkit from the Open Forcefield Consortium.☆58Updated last week
- Best practice document for alchemical free energy calculations going to livecoms journal☆81Updated last week
- Data and scripts for comprehensive benchmark of conformer relative energies☆25Updated 5 years ago
- Ensembler is a python package that provides fast and easy access to 1D and 2D model system simulations. It can be used for method develop…☆55Updated last year
- Dihedral scanner with wavefront propagation☆35Updated 8 months ago
- Plugins to enable using custom functional forms in SMIRNOFF based force fields☆11Updated this week
- ☆30Updated 3 weeks ago
- A command line application to launch molecular dynamics simulations with OpenMM☆40Updated 3 years ago
- A Package for Parametrization of Molecular Mechanics Force Fields☆32Updated 3 years ago
- Example to fit parameters and run CG simulations using TorchMD and Schnet☆47Updated 3 years ago