ciceklab / DeepNDLinks
DeepND ASD & ID
☆12Updated 3 years ago
Alternatives and similar repositories for DeepND
Users that are interested in DeepND are comparing it to the libraries listed below
Sorting:
- CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)☆27Updated 3 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆33Updated 6 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆40Updated 4 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆50Updated 2 years ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆65Updated last year
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆89Updated 4 months ago
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆47Updated 2 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆35Updated last year
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆22Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆38Updated 5 years ago
- SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.☆17Updated 11 months ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 10 months ago
- Single-cell exploratory data analysis for RNA-Seq☆40Updated 4 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Updated 3 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆58Updated 8 months ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆72Updated 2 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆47Updated 9 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Updated last year
- Deep representation learning for disease prediction based on microbiome data☆63Updated 2 years ago
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆97Updated last year
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆20Updated 10 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated last year
- Code associated with MIX-seq manuscript☆15Updated 5 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 4 years ago
- ☆77Updated 4 years ago
- Python package to load and query ARCHS4 data☆26Updated 6 months ago
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year