amazon-archives / AWS-MIMIC-IIItoOMOP
Demonstrates creating a healthcare data warehouse using the MIMIC-III dataset on Redshift, Spark on EMR and Lambda
☆21Updated 4 years ago
Related projects ⓘ
Alternatives and complementary repositories for AWS-MIMIC-IIItoOMOP
- CDM conversion of MIMIC dataset.☆16Updated 8 years ago
- Automation code and documentation for standing up the OHDSI toolstack in an AWS environment☆72Updated last year
- Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM☆59Updated 3 weeks ago
- The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)☆24Updated 3 years ago
- The PCORnet Common Data Model (CDM) Forum guidance repository contains materials intended to support implementation efforts by data partn…☆30Updated 4 years ago
- Repository of OHDSI Collaborative Research Protocols☆37Updated last year
- Workproducts to ETL CMS datasets into OMOP Common Data Model☆98Updated 2 years ago
- Main OMOPonFHIR Settings☆45Updated 2 years ago
- An R package for generating features (covariates) for a cohort using data in the Common Data Model.☆60Updated 3 weeks ago
- An R package for evaluating phenotype algorithms.☆17Updated last month
- ☆24Updated 6 years ago
- Pilot model and converter for integration of radiology data into OMOP-CDM☆22Updated 5 years ago
- Tutorial on prediction with medical data using tree based models☆19Updated last year
- clinical free text de-identification software☆41Updated 6 years ago
- Collection of various biomedical data models in parseable formats.☆28Updated 2 weeks ago
- An R package for performing various cohort diagnostics.☆41Updated this week
- Predicting 30-day ICU readmissions from the MIMIC-III database☆82Updated 6 years ago
- ARCHIVED Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical…☆55Updated 2 years ago
- HEDIS FHIR-based Quality Reporting☆29Updated 4 years ago
- Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.☆54Updated 3 years ago
- Mapping the MIMIC-III database to the OMOP schema☆127Updated 7 months ago
- Automated Characterization of Health Information at Large-scale Longitudinal Evidence Systems (ACHILLES) - descriptive statistics about a…☆130Updated last month
- Omop on FHIR☆18Updated 5 years ago
- Dynamic visualization of Electronic Health Record data in the OMOP framework☆27Updated 3 years ago
- Clinical NLP workshop for ODSC☆39Updated 5 years ago
- Machine learning on electronic health records☆11Updated 6 years ago
- Download and load MIMIC-III into a PostgreSQL DB on an Ubuntu VM☆10Updated 8 years ago
- Tools for working with icd codes and comorbidities☆27Updated 3 years ago
- ☆22Updated 6 months ago
- a Python tool to extract and structure numeric lab test comparison statements from text☆22Updated last year