Alternatives and similar repositories for shinySIR:

Users that are interested in shinySIR are comparing it to the libraries listed below

• mhoehle / STA427_SM4IDE
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆18Updated 3 years ago
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆40Updated last month
• adamkucharski / 2020-cov-tracing
  Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…
  ☆13Updated 2 years ago
• calumdavey / RUG
  Repo for the LSHTM R Users Group (RUG)
  ☆9Updated 3 years ago
• SABS-R3-Epidemiology / epiabm
  Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.
  ☆17Updated 3 months ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• akira-endo / COVID19_backwardtracing
  Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing
  ☆8Updated 4 years ago
• WHO-Collaboratory / collaboratory-epipipeline-community
  ☆14Updated last year
• lsbastos / Delay
  Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.
  ☆15Updated 5 years ago
• epiverse-trace / epiparameter
  R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…
  ☆35Updated last month
• oswaldosantos / EpiDynamics
  An R package with Dynamic Models of infectious diseases
  ☆29Updated 4 months ago
• appliedepi / epirhandbook
  An R package to accompany the Epidemiology R Handbook, a free open-access R reference manual for applied epidemiologists and public healt…
  ☆44Updated 6 months ago
• mrc-ide / individual
  R Package for individual based epidemiological models
  ☆30Updated 6 months ago
• goldingn / covid19_australia_interventions
  Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia
  ☆13Updated last year
• cran-task-views / Epidemiology
  CRAN Task View: Epidemiology
  ☆23Updated last week
• DenisRustand / INLAjoint
  Joint modeling multivariate longitudinal and time-to-event outcomes with INLA
  ☆19Updated last week
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆18Updated this week
• cdcepi / Flusight-forecast-data
  ☆40Updated 8 months ago
• gasparrini / ItalyCOVIDdeath
  Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic
  ☆15Updated last month
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆48Updated 2 years ago
• mac-theobio / McMasterPandemic
  SEIR+ model
  ☆19Updated 6 months ago
• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated last year
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆17Updated 4 years ago
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆53Updated 4 months ago
• adamkucharski / scrapR
  Extract raw underlying data from PDF figures
  ☆56Updated last year
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆18Updated last year
• phcanalytics / covid19_epi_model
  Code and methods for COVID19 lagged mobility and sociodemographic association model US county-level
  ☆11Updated 4 years ago
• rudeboybert / SpatialEpi
  R Package of methods and data for spatial epidemiology
  ☆31Updated 2 years ago
• jstockwin / EpiEstimApp
  Source code for the EpiEstim app.
  ☆31Updated 4 years ago