Alternatives and similar repositories for COVID-19

Users that are interested in COVID-19 are comparing it to the libraries listed below

• mrc-ide / COVID19_CFR_submission
  Repository for all scripts required to replicate the CFR analysis for paper submission.
  ☆71Updated 4 years ago
• jriou / covid_adjusted_cfr
  ☆89Updated 5 years ago
• betanalpha / knitr_case_studies
  Inference case studies in knitr
  ☆170Updated 3 years ago
• jgabry / bayes-vis-paper
  'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)
  ☆66Updated 5 years ago
• eleanormurray / causalgraphs_latex
  Drawing graphical models for causal inference using LaTeX
  ☆119Updated 2 years ago
• objornstad / epimdr
  R package for "Epidemics: Models and data using R"
  ☆55Updated 3 years ago
• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆100Updated this week
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• LaplacesDemonR / LaplacesDemon
  A complete environment for Bayesian inference within R
  ☆97Updated last year
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆118Updated last month
• betanalpha / stan_intro
  Draft introduction to probability and inference aimed at the Stan manual.
  ☆83Updated 9 years ago
• gabriuma / basis_functions_approach_to_GP
  ☆56Updated 3 years ago
• avehtari / modelselection
  Case studies on model assessment, model selection and inference after model selection
  ☆170Updated last year
• stan-dev / loo
  loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)
  ☆155Updated last week
• rmcelreath / cmdstan_map_rect_tutorial
  Beginner tutorial for using cmdstan with multithreading
  ☆62Updated 5 years ago
• epiforecasts / EpiNow2
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆132Updated this week
• EMOD-Hub / EMOD
  Source files for building the IDM EMOD disease transmission model.
  ☆104Updated 3 weeks ago
• lilywang1988 / eSIR
  Extended state-space SIR epidemiological models
  ☆75Updated 4 years ago
• stan-dev / stancon_talks
  Materials from Stan conferences
  ☆255Updated 5 years ago
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆55Updated last year
• adamkucharski / 2020-ncov
  Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling s…
  ☆71Updated 2 years ago
• andrewcparnell / jags_examples
  A large set of JAGS examples using R
  ☆98Updated 2 years ago
• nimble-dev / nimble
  The base NIMBLE package for R
  ☆184Updated this week
• stan-dev / projpred
  Projection predictive variable selection
  ☆112Updated last week
• jgabry / bayes-workflow-book
  Source files for the book "Bayesian Workflow Using Stan"
  ☆96Updated 4 years ago
• EpiModel / EpiModel
  Mathematical Modeling of Infectious Disease Dynamics
  ☆260Updated 2 months ago
• jtextor / dagitty
  Graphical analysis of structural causal models / graphical causal models.
  ☆322Updated 11 months ago
• theodds / SoftBART
  ☆32Updated last month
• rmcelreath / causal_salad_2021
  One day course on causal inference, MPI-EVA 9 September 2021
  ☆249Updated 3 years ago
• milkha / Splines_in_Stan
  Implementation of B-Splines in Stan
  ☆51Updated 8 years ago