Alternatives and similar repositories for COVID-19

Users that are interested in COVID-19 are comparing it to the libraries listed below

• jriou / covid_adjusted_cfr
  ☆89Updated 5 years ago
• mrc-ide / COVID19_CFR_submission
  Repository for all scripts required to replicate the CFR analysis for paper submission.
  ☆71Updated 5 years ago
• betanalpha / knitr_case_studies
  Inference case studies in knitr
  ☆171Updated 3 years ago
• avehtari / modelselection
  Case studies on model assessment, model selection and inference after model selection
  ☆170Updated last year
• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆101Updated last week
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆118Updated last month
• rmcelreath / causal_salad_2021
  One day course on causal inference, MPI-EVA 9 September 2021
  ☆249Updated 3 years ago
• jgabry / bayes-vis-paper
  'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)
  ☆67Updated 5 years ago
• eleanormurray / causalgraphs_latex
  Drawing graphical models for causal inference using LaTeX
  ☆119Updated 2 years ago
• betanalpha / stan_intro
  Draft introduction to probability and inference aimed at the Stan manual.
  ☆84Updated 9 years ago
• jgabry / bayes-workflow-book
  Source files for the book "Bayesian Workflow Using Stan"
  ☆97Updated 4 years ago
• jtextor / dagitty
  Graphical analysis of structural causal models / graphical causal models.
  ☆323Updated last year
• objornstad / epimdr
  R package for "Epidemics: Models and data using R"
  ☆55Updated 3 years ago
• gabriuma / basis_functions_approach_to_GP
  ☆56Updated 3 years ago
• bd2kccd / r-causal
  R Wrapper for Tetrad Library
  ☆35Updated last year
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• stan-dev / projpred
  Projection predictive variable selection
  ☆113Updated 3 weeks ago
• stan-dev / loo
  loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)
  ☆155Updated this week
• epidemics / COVIDNPIs
  Data and code for COVID-19 NPI effectiveness estimation.
  ☆30Updated 4 years ago
• rmcelreath / cmdstan_map_rect_tutorial
  Beginner tutorial for using cmdstan with multithreading
  ☆62Updated 5 years ago
• nimble-dev / nimble
  The base NIMBLE package for R
  ☆186Updated last week
• epiforecasts / EpiNow2
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆132Updated last week
• EpiModel / EpiModel
  Mathematical Modeling of Infectious Disease Dynamics
  ☆262Updated last month
• stan-dev / cmdstan
  CmdStan, the command line interface to Stan
  ☆235Updated last week
• vdorie / bartCause
  Causal Inference using Bayesian Additive Regression Trees
  ☆84Updated 5 months ago
• adamkucharski / 2020-ncov
  Accompanying code for: Kucharski AJ, Russell TW et al. Early dynamics of transmission and control of COVID-19: a mathematical modelling s…
  ☆71Updated 3 years ago
• stan-dev / posteriordb
  Database with posteriors of interest for Bayesian inference
  ☆212Updated 4 months ago
• ehkennedy / npcausal
  ☆96Updated last year
• florianhartig / BayesianTools
  General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
  ☆126Updated last year
• bob-carpenter / prob-stats
  Probability and Statistics: a simulation-based introduction. An open-access book.
  ☆322Updated 2 years ago