RDadarwal / Diffusion-MRI
Jupyter notebooks for analyzing diffusion MRI data in order to calculate DTI, DKI, NODDI, SS3T-CSD, and MSMT-CSD modelled parametric maps
☆14Updated last year
Alternatives and similar repositories for Diffusion-MRI:
Users that are interested in Diffusion-MRI are comparing it to the libraries listed below
- A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support☆26Updated last week
- ☆28Updated 11 months ago
- Official TORTOISE Diffusion MRI Processing Pipeline V4 Source Code and Documentation☆25Updated last week
- Toolbox for parameter estimation of the Standard Model of diffusion in white matter☆24Updated last month
- DeepPrep: An accelerated, scalable, and robust pipeline for neuroimaging preprocessing empowered by deep learning☆77Updated 2 months ago
- ☆18Updated last month
- CIVET Installer☆26Updated 3 years ago
- Automatic BIDS architecture☆14Updated 8 months ago
- ☆17Updated last year
- Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline☆52Updated last year
- ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…☆53Updated 2 weeks ago
- Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…☆23Updated last year
- ☆36Updated 3 years ago
- niimath - a clone of fslmaths. Try the live demo:☆60Updated 4 months ago
- An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images☆50Updated 9 months ago
- AICONSlab's white matter hyperintensities (WMH) segmentation algorithm using CNNs☆17Updated 7 months ago
- A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)☆69Updated this week
- Perivascular (PVS) or Virchow–Robin Spaces (VRS) segmentation with a 3D Unet☆27Updated 6 months ago
- dMRI based fiber tracking using parallel transport tractography☆25Updated 2 months ago
- A suite of brain PET processing pipelines☆14Updated 4 months ago
- Purifibre removes spurious streamlines from tractograms☆10Updated 3 years ago
- Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes☆36Updated last week
- The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox☆68Updated this week
- CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI☆13Updated last month
- Microscopic diffusion anisotropy imaging made easy!☆24Updated 6 years ago
- PysynthMRI is a python open-source tool which provides a user-friendly interface to synthesize contrast weighted images.☆20Updated last year
- PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sh…☆27Updated 2 months ago
- A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data☆63Updated 5 months ago
- List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data☆64Updated last year
- Nature is a language---can't you read?☆12Updated 3 years ago