AgatheSenellart / MultiVae
Unifying Multimodal Variational Autoencoders (VAEs) in Pytorch
☆29Updated this week
Alternatives and similar repositories for MultiVae:
Users that are interested in MultiVae are comparing it to the libraries listed below
- Archetypal Analysis network (AAnet)☆31Updated 2 months ago
- Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data☆67Updated 11 months ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆37Updated last year
- ☆17Updated 3 months ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated last year
- Learning disentangled representations of single-cell data for high-quality generation☆15Updated 10 months ago
- ☆57Updated last year
- Conditional out-of-distribution prediction☆56Updated 5 months ago
- The software of Pamona, a partial manifold alignment algorithm.☆19Updated 3 years ago
- Hypergraph Factorisation☆22Updated last month
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- Learning meaningful representations of genes☆14Updated 3 months ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆49Updated 3 years ago
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆15Updated last year
- ☆18Updated 2 years ago
- Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)☆15Updated 7 months ago
- single-cell graph autoencoder☆21Updated 3 years ago
- Deep Generative Modeling of RNA Velocity☆35Updated 2 months ago
- Multiscale earth mover's distance methods for tree and manifold structured data☆11Updated last year
- ☆17Updated 3 years ago
- ☆16Updated 4 years ago
- ☆16Updated 2 years ago
- ☆15Updated 2 years ago
- ☆13Updated this week
- ☆54Updated 2 years ago
- a unified single-cell data integration framework by optimal transport☆33Updated 3 months ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆22Updated 3 years ago
- ☆15Updated 3 years ago
- Negative-Binomial VAE for discrete data☆18Updated 4 years ago