wehs7661 / enhanced_sampling_tutorials
A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling methods using GROMACS
☆16Updated 7 months ago
Alternatives and similar repositories for enhanced_sampling_tutorials
Users that are interested in enhanced_sampling_tutorials are comparing it to the libraries listed below
Sorting:
- Repository for MD methods and analysis from submitted or published work☆17Updated last year
- Examples of applications of pymbar to various problems in simulation and experiment☆21Updated 10 years ago
- Enhanced sampling methods for molecular dynamics simulations☆36Updated 2 years ago
- Perform polymerization and crosslinking in MARTINI coarse-grained forcefield using GROMACS MD package☆21Updated 2 months ago
- COSMO: COarse-grained Simulation of intrinsically disordered prOteins with openMM☆12Updated last year
- Several QM/MM tutorials for biological simulations adapted to CP2K. Tutorials adapted from AMBER, GMX, NAMD and CPMD softwares.☆22Updated 5 years ago
- Convenience functions for VMD-TCL scripting☆14Updated 5 months ago
- A Python toolkit for the analyis of lipid membrane simulations☆30Updated 2 months ago
- A simple implementation of replica exchange MD simulations for OpenMM.☆23Updated 3 years ago
- Generates Martini models for open carbon nanotubes to use with Gromacs.☆15Updated 3 years ago
- A python package for performing GROMACS simulation ensembles☆13Updated 2 weeks ago
- Coarse-grained mapping and parametrisation for the Martini 3 forcefield☆16Updated last month
- Multiscale Simulation Tool for Backmapping☆17Updated last month
- ☆9Updated 5 years ago
- MM and QM/MM setup for a metalloprotein using GROMACS, Chemshell and ORCA (Using the CHARMM forcefield (both in GROMACS and with Chemshe…☆22Updated 11 months ago
- ☆11Updated 11 months ago
- TS2CG version 2☆12Updated 2 weeks ago
- Gromacs Implementation of OPLS-AAM Force field☆13Updated 6 years ago
- ☆21Updated 8 months ago
- ☆12Updated 3 months ago
- Useful Collective Variables for OpenMM☆13Updated last year
- Materials for the 2021 PRACE Workshop @ SurfSARA☆30Updated 3 years ago
- ☆14Updated 11 months ago
- Absolute solvation free energy calculations with OpenFF and OpenMM☆22Updated 5 months ago
- Collective variables by artificial neural networks☆9Updated 3 years ago
- Build coarse-grained mapping for molecules from a web-GUI☆13Updated 3 years ago
- ☆11Updated 3 months ago
- Materials, issues and things for the 2018 Workshop and Hackathon☆14Updated 5 years ago
- Using neural networks for enhanced sampling in computational biophysics☆16Updated 7 years ago
- Density based object completion over PBC.☆30Updated 5 months ago