tuttelikz / farabio
PyTorch toolkit for biomedical imaging
☆52Updated 5 months ago
Alternatives and similar repositories for farabio:
Users that are interested in farabio are comparing it to the libraries listed below
- Analysis of results of the Data Science Bowl 2018☆21Updated 4 years ago
- DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep …☆36Updated 4 years ago
- InstantDL: An easy and convenient deep learning pipeline for image segmentation and classification☆44Updated 2 years ago
- Human Protein Atlas image classification competition☆13Updated last year
- Self-supervised learning for microscopy images☆55Updated 5 years ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medic…☆62Updated 3 years ago
- U-net based segmentation of nuclei in microscopy images☆52Updated 6 years ago
- 1st place solution of OSIC Pulmonary Fibrosis Progression competition at Kaggle☆25Updated 4 years ago
- Survival Convolutional Neural Networks☆69Updated last year
- A deep-learning pipeline for segmentation of ambiguous microscopic images.☆58Updated 5 months ago
- Official Keras & PyTorch Implementation and Pre-trained Models for TransVW☆61Updated 3 years ago
- Starter code for the CellSignal NeurIPS 2019 competition.☆45Updated 8 months ago
- Material for the 2020 MONAI Bootcamp☆66Updated 4 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆36Updated this week
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- 2nd place solution for the RSNA STR Pulmonary Embolism Detection competition on Kaggle.☆29Updated 4 years ago
- 2D Vector-Quantized Auto-Encoder for compression of Whole-Slide Images in Histopathology☆15Updated 8 months ago
- To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory avail…☆100Updated last year
- Label Free Prediction of Cell Painting from Brightfield Images☆28Updated 2 years ago
- A collection of deep learning models with a unified API.☆69Updated 2 years ago
- ☆25Updated 4 years ago
- A PyTorch implementation of the Probabilistic U-Net, applied to probabilistic glioma growth☆43Updated 5 years ago
- Notebooks for VoidSeg☆16Updated 5 years ago
- Code for CheXpert Challenge 2019 Top 1 && Top 2 solution☆30Updated 5 years ago
- A High-Throughput Workflow for Preprocessing, Deep Learning Analytics and Interpretation in Digital Pathology☆40Updated 2 years ago
- ☆10Updated 3 years ago
- Benchmarking toolkit for patch-based histopathology image classification.☆40Updated last year
- A U-Net combined with a variational auto-encoder that is able to learn conditional distributions over semantic segmentations.☆23Updated 6 years ago
- Core functionality of Eisen☆41Updated 4 years ago