Alternatives and similar repositories for protocols:

Users that are interested in protocols are comparing it to the libraries listed below

• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆60Updated 4 months ago
• hufsaim / pvsseg
  perivascular space segmentation
  ☆14Updated 2 years ago
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated 5 months ago
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆50Updated 8 months ago
• AICONSlab / SynthSegCSVD
  CNN-based segmentation tool for segmenting PVS on T1 and WMH on FLAIR MRI
  ☆13Updated last month
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated last week
• mr-jaemin / ge-mri
  GE HealthCare MRI research
  ☆16Updated 3 months ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆25Updated last week
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆69Updated this week
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆66Updated this week
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• benoitberanger / mp2rage
  SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts
  ☆10Updated last year
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆48Updated last week
• EhsanTadayon / choroid-plexus-segmentation
  Segmentation of Choroid Plexus using Gaussian Mixture Model
  ☆14Updated 3 weeks ago
• vzachari / IronSmithQSM
  Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM…
  ☆23Updated last year
• freesurfer / surfa
  Python utilities for medical image and surface-based analysis
  ☆29Updated 3 weeks ago
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆64Updated last year
• NYU-DiffusionMRI / SMI
  Toolbox for parameter estimation of the Standard Model of diffusion in white matter
  ☆24Updated last month
• KUL-Radneuron / KUL_VBG
  A workflow to allow Freesurfer recon-all to run on brain image with gliomas
  ☆29Updated 10 months ago
• neurolabusc / NiiStat
  NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations
  ☆31Updated 4 years ago
• baranaydogan / purifibre
  Purifibre removes spurious streamlines from tractograms
  ☆10Updated 3 years ago
• NYU-DiffusionMRI / DESIGNER-v1
  Diffusion parameter EStImation with Gibbs and NoisE Removal pipeline
  ☆51Updated last year
• yu02019 / BEN
  ☆27Updated 11 months ago
• DevelopmentalImagingMCRI / karawun
  Convert tractography studies from mrtrix into dicom for use in navigation software
  ☆15Updated last month
• Haoyulance / WPSS
  Weakly supervised perivascular spaces segmentation with salient guidance of Frangi filter
  ☆13Updated last year
• SCAN-NRAD / DL-DiReCT
  DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation
  ☆26Updated last week
• Gilles86 / pymp2rage
  Lightweight Python package to process MP2RAGE and ME-MP2RAGE-data
  ☆21Updated last year
• Hierakonpolis / MU-Net
  Multi-task U-Net for the simultaneous segmentation and skull-stripping of mouse brain MRI
  ☆22Updated 3 years ago
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆57Updated 2 years ago
• benoitberanger / niix2bids
  Automatic BIDS architecture
  ☆14Updated 7 months ago