Alternatives and similar repositories for protocols

Users that are interested in protocols are comparing it to the libraries listed below

• xiangruili / dicm2nii
  DICOM to NIfTI conversion, NIfTI tools
  ☆100Updated last year
• rordenlab / niimath
  niimath - a clone of fslmaths. Try the live demo:
  ☆66Updated 2 weeks ago
• daducci / AMICO
  Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data
  ☆112Updated last week
• ExploreASL / ExploreASL
  ExploreASL: releases can be found in the main branch or within the releases tab. If you want to contribute, please contact us at h.j.muts…
  ☆53Updated last month
• MASILab / PreQual
  An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images
  ☆52Updated last year
• scilus / scilpy
  The Sherbrooke Connectivity Imaging Lab (SCIL) Python dMRI processing toolbox
  ☆74Updated 2 weeks ago
• SlicerDMRI / whitematteranalysis
  White matter tractography clustering and more...
  ☆77Updated 2 months ago
• hMRI-group / hMRI-toolbox
  A toolbox for quantitative MRI and in vivo histology using MRI (hMRI)
  ☆71Updated last week
• Deep-MI / fsqc
  A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data
  ☆63Updated 2 weeks ago
• PennLINC / qsiprep
  Preprocessing of diffusion MRI
  ☆161Updated last week
• PennLINC / aslprep
  Preprocessing of arterial spin labeling (ASL) data
  ☆50Updated last week
• Aswendt-Lab / AIDAmri
  Atlas-based Imaging Data Analysis Pipeline (AIDA) for structural and functional MRI of the mouse brain
  ☆30Updated 3 weeks ago
• AthenaEPI / dmipy
  The open source toolbox for reproducible diffusion MRI-based microstructure estimation
  ☆107Updated 8 months ago
• MASILab / Synb0-DISCO
  Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps
  ☆73Updated 3 weeks ago
• hufsaim / pvsseg
  perivascular space segmentation
  ☆16Updated 2 years ago
• CoBrALab / atlases
  Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space
  ☆34Updated 2 years ago
• mezera / mrQ
  mrQ_BoxJoinBox
  ☆22Updated last year
• KUL-Radneuron / KUL_VBG
  A workflow to allow Freesurfer recon-all to run on brain image with gliomas
  ☆30Updated last year
• baranaydogan / purifibre
  Purifibre removes spurious streamlines from tractograms
  ☆10Updated 3 years ago
• JosePMarques / MP2RAGE-related-scripts
  MP2RAGE Scripts - T1 map correction & Background noise removal
  ☆64Updated 2 years ago
• npnl / PALS
  Pipeline for Analysing Lesions after Stroke (PALS) is a scalable and user-friendly toolbox designed to facilitate standardised analysis a…
  ☆24Updated 4 months ago
• benoitberanger / mp2rage
  SPM implementation of https://github.com/JosePMarques/MP2RAGE-related-scripts
  ☆11Updated last year
• yeatmanlab / pyAFQ
  Please visit our new location: https://github.com/tractometry/pyAFQ
  ☆59Updated 10 months ago
• mathieuboudreau / qsm-tools
  List of open-source quantitative susceptibility mapping (QSM) MRI software packages and data
  ☆68Updated 2 years ago
• freesurfer / surfa
  Python utilities for medical image and surface-based analysis
  ☆32Updated 3 weeks ago
• CoBrALab / optimized_antsMultivariateTemplateConstruction
  A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
  ☆30Updated last week
• gbarisano / alps
  Bash script to compute DTI-ALPS
  ☆58Updated last month
• HumanBrainED / NHP-BrainExtraction
  ☆39Updated 3 years ago
• BioMedIA / dhcp-structural-pipeline
  structural analysis of neonatal brain MRI scans
  ☆56Updated 4 years ago
• miykael / gif_your_nifti
  How to create fancy GIFs from an MRI brain image
  ☆123Updated last year